fast-model-mpi-explosion.yml

name: Fast model MPI tests

on: [push, pull_request]

jobs:

  pytest:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v2
    - name: Pytest Unit Tests
      uses: actions/setup-python@v2
      with:
        python-version: '3.9'
    - name: Install prerequisites
      run: |
        sudo apt-get update
        sudo apt-get install python3-setuptools subversion git libopenmpi-dev g++ libjpeg8 libjpeg8-dev libfreetype6 libfreetype6-dev zlib1g-dev libpng++-dev libncurses5 libncurses5-dev libreadline-dev liblapack-dev libblas-dev gfortran libgsl0-dev openmpi-bin python-tk cmake
        pip3 install pytest pytest-cov pytest-randomly coverage black
        # TODO: Add pynn once we switch from our custom to the official release
        pip3 install numpy scipy mpi4py matplotlib quantities lazyarray interval Pillow param==1.5.1 parameters neo==0.12.0 cython psutil future requests elephant pytest-xdist pytest-timeout junitparser numba numpyencoder sphinx imageio
    - name: Download and install imagen
      run: |
        git clone https://github.com/antolikjan/imagen.git
        cd imagen
        python setup.py install
        cd ..

    # TODO: Remove this block once we switch from our custom pynn to the official release
    - name: Download and install PyNN
      run: |
        git clone https://github.com/CSNG-MFF/PyNN.git
        cd PyNN
        git checkout PyNNStepCurrentModule
        pip install .
        cd ..

    - name: Install Nest
      run: |
        wget https://github.com/nest/nest-simulator/archive/v3.4.tar.gz
        tar xvfz v3.4.tar.gz
        cd nest-simulator-3.4
        cmake -Dwith-mpi=ON -Dwith-boost=ON -DCMAKE_INSTALL_PREFIX:PATH=$pythonLocation -Dwith-optimize='-O3' ./
        make -j8
        make -j8 install
        cd ..
        python -c 'import nest'

    - name: Install mozaik
      run: python setup.py install

    - name: Test with pytest
      run: pytest -m "mpi and not not_github and mpi_explosion" ./tests/full_model/test_models_mpi.py --cov=mozaik