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janelia-cosem.yaml
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Name: Cell Organelle Segmentation in Electron Microscopy (COSEM) on AWS
Description: High resolution images of subcellular structures.
Documentation: https://github.com/janelia-cosem/aws-opendata/blob/master/cosem-introduction.md
Contact: [email protected]
ManagedBy: "[Janelia Research Campus](https://www.janelia.org/)"
UpdateFrequency: New datasets and derived data are added as soon as they are available.
Tags:
- cell biology
- organelle
- electron microscopy
- computer vision
- machine learning
License: CC-BY-4.0
Resources:
- Description: Raw FIB-SEM datasets and derived data.
ARN: arn:aws:s3:::janelia-cosem
Region: us-east-1
Type: S3 Bucket
- Description: Machine learning models for organelle prediction.
ARN: arn:aws:s3:::janelia-cosem-networks
Region: us-east-1
Type: S3 Bucket
DataAtWork:
Tools & Applications:
Tutorials:
Publications:
- Title: Enhanced FIB-SEM systems for large-volume 3D imaging
URL: https://elifesciences.org/articles/25916
AuthorName: C. Shan Xu, Kenneth J. Hayworth, Zhiyuan Lu, Patricia Grob, Ahmed M. Hassan, José G. García-Cerdán, Krishna K. Niyogi, Eva Nogales, Richard J. Weinberg, Harald F. Hess.
- Title: Correlative three-dimensional super-resolution and block-face electron microscopy of whole vitreously frozen cells.
URL: https://science.sciencemag.org/content/367/6475/eaaz5357
AuthorName: David P. Hoffman1, Gleb Shtengel, C. Shan Xu, Kirby R. Campbell, Melanie Freeman, Lei Wang, Daniel E. Milkie, H. Amalia Pasolli, Nirmala Iyer, John A. Bogovic, Daniel R. Stabley, Abbas Shirinifard, Song Pang, David Peale, Kathy Schaefer, Wim Pomp, Chi-Lun Chang, Jennifer Lippincott-Schwartz, Tom Kirchhausen1, David J. Solecki, Eric Betzig, Harald F. Hess.