qfit

#!/bin/bash

# Determine next job id
test -f .job || echo 0 > .job
jobid=$((`cat .job`+1))

# Generate the job name
jobname=`pwd | sed -e "s,^.*/,,;s,^\(.......\).*$,\\1,"`-$jobid

# Create the working directory for the job to run.
# Copy the entire context so that the run can be reproduced.
outdir=output.$jobid
mkdir $outdir
for f in *; do
  test -f $f && cp -a $f $outdir
done

# Try building the new setup.c, removing the working
# directory if this fails.
cd $outdir
if make; then
  # If build succeeded then increment the job id
  echo $jobid >../.job
else
  # If build failed, then remove the working directory
  cd .. && rm -r $outdir && echo "Build failed" && exit
fi


# Construct the job queue request
cat >$jobname <<END
#$ -S /bin/bash
#$ -j y
#$ -cwd
LD_LIBRARY_PATH=/opt/intel/current/lib/intel64 ./fit -n 1000 $*
END

# Submit the job 
qsub -o queue.out $jobname
qstat
echo "Job output will be in $outdir"