plink.log

@----------------------------------------------------------@
|        PLINK!       |     v1.07      |   10/Aug/2009     |
|----------------------------------------------------------|
|  (C) 2009 Shaun Purcell, GNU General Public License, v2  |
|----------------------------------------------------------|
|  For documentation, citation & bug-report instructions:  |
|        http://pngu.mgh.harvard.edu/purcell/plink/        |
@----------------------------------------------------------@

Web-based version check ( --noweb to skip )
Recent cached web-check found... OK, v1.07 is current

+++ PLINK 1.9 is now available! See above website for details +++ 

Writing this text to log file [ plink.log ]
Analysis started: Sun Dec 11 12:23:11 2016

Options in effect:
	--bfile Simple_Genomics/adni100kFiltered
	--chr 22

Reading map (extended format) from [ Simple_Genomics/adni100kFiltered.bim ] 
76551 markers to be included from [ Simple_Genomics/adni100kFiltered.bim ]
Scan region on chromosome 22 from [ rs9604967 ] to [ rs6010061 ]
Reading pedigree information from [ Simple_Genomics/adni100kFiltered.fam ] 
756 individuals read from [ Simple_Genomics/adni100kFiltered.fam ] 
0 individuals with nonmissing phenotypes
Assuming a disease phenotype (1=unaff, 2=aff, 0=miss)
Missing phenotype value is also -9
0 cases, 0 controls and 756 missing
448 males, 308 females, and 0 of unspecified sex
Reading genotype bitfile from [ Simple_Genomics/adni100kFiltered.bed ] 
Detected that binary PED file is v1.00 SNP-major mode
Before frequency and genotyping pruning, there are 1098 SNPs
756 founders and 0 non-founders found
Total genotyping rate in remaining individuals is 0.998317
0 SNPs failed missingness test ( GENO > 1 )
0 SNPs failed frequency test ( MAF < 0 )
After frequency and genotyping pruning, there are 1098 SNPs
After filtering, 0 cases, 0 controls and 756 missing
After filtering, 448 males, 308 females, and 0 of unspecified sex

Analysis finished: Sun Dec 11 12:23:12 2016