diff --git a/.Rbuildignore b/.Rbuildignore index 71680b4..a6dcd60 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -7,3 +7,4 @@ ^pkgdown$ ^\.github$ ^vignettes/articles$ +^codecov\.yml$ diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml new file mode 100644 index 0000000..4d6d4f5 --- /dev/null +++ b/.github/workflows/R-CMD-check.yaml @@ -0,0 +1,61 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +# +# NOTE: This workflow is overkill for most R packages and +# check-standard.yaml is likely a better choice. +# usethis::use_github_action("check-standard") will install it. +on: + push: + branches: [main, master] + pull_request: + branches: [main, master] + +name: R-CMD-check + +jobs: + R-CMD-check: + runs-on: ${{ matrix.config.os }} + + name: ${{ matrix.config.os }} (${{ matrix.config.r }}) + + strategy: + fail-fast: false + matrix: + config: + - {os: macos-latest, r: 'release'} + + - {os: windows-latest, r: 'release'} + # use 4.1 to check with rtools40's older compiler + - {os: windows-latest, r: '4.1'} + + - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} + - {os: ubuntu-latest, r: 'release'} + - {os: ubuntu-latest, r: 'oldrel-1'} + - {os: ubuntu-latest, r: 'oldrel-2'} + - {os: ubuntu-latest, r: 'oldrel-3'} + - {os: ubuntu-latest, r: 'oldrel-4'} + + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + R_KEEP_PKG_SOURCE: yes + + steps: + - uses: actions/checkout@v4 + + - uses: r-lib/actions/setup-pandoc@v2 + + - uses: r-lib/actions/setup-r@v2 + with: + r-version: ${{ matrix.config.r }} + http-user-agent: ${{ matrix.config.http-user-agent }} + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::rcmdcheck + needs: check + + - uses: r-lib/actions/check-r-package@v2 + with: + upload-snapshots: true + build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 087f0b0..a7276e8 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -19,8 +19,10 @@ jobs: group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + permissions: + contents: write steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - uses: r-lib/actions/setup-pandoc@v2 @@ -39,7 +41,7 @@ jobs: - name: Deploy to GitHub pages 🚀 if: github.event_name != 'pull_request' - uses: JamesIves/github-pages-deploy-action@v4.4.1 + uses: JamesIves/github-pages-deploy-action@v4.5.0 with: clean: false branch: gh-pages diff --git a/.github/workflows/pr-commands.yaml b/.github/workflows/pr-commands.yaml new file mode 100644 index 0000000..eea58c5 --- /dev/null +++ b/.github/workflows/pr-commands.yaml @@ -0,0 +1,79 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + issue_comment: + types: [created] + +name: Commands + +jobs: + document: + if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/document') }} + name: document + runs-on: ubuntu-latest + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + steps: + - uses: actions/checkout@v4 + + - uses: r-lib/actions/pr-fetch@v2 + with: + repo-token: ${{ secrets.GITHUB_TOKEN }} + + - uses: r-lib/actions/setup-r@v2 + with: + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::roxygen2 + needs: pr-document + + - name: Document + run: roxygen2::roxygenise() + shell: Rscript {0} + + - name: commit + run: | + git config --local user.name "$GITHUB_ACTOR" + git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" + git add man/\* NAMESPACE + git commit -m 'Document' + + - uses: r-lib/actions/pr-push@v2 + with: + repo-token: ${{ secrets.GITHUB_TOKEN }} + + style: + if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/style') }} + name: style + runs-on: ubuntu-latest + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + steps: + - uses: actions/checkout@v4 + + - uses: r-lib/actions/pr-fetch@v2 + with: + repo-token: ${{ secrets.GITHUB_TOKEN }} + + - uses: r-lib/actions/setup-r@v2 + + - name: Install dependencies + run: install.packages("styler") + shell: Rscript {0} + + - name: Style + run: styler::style_pkg() + shell: Rscript {0} + + - name: commit + run: | + git config --local user.name "$GITHUB_ACTOR" + git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" + git add \*.R + git commit -m 'Style' + + - uses: r-lib/actions/pr-push@v2 + with: + repo-token: ${{ secrets.GITHUB_TOKEN }} diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml new file mode 100644 index 0000000..21b8a93 --- /dev/null +++ b/.github/workflows/test-coverage.yaml @@ -0,0 +1,50 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + push: + branches: [main, master] + pull_request: + branches: [main, master] + +name: test-coverage + +jobs: + test-coverage: + runs-on: ubuntu-latest + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + + steps: + - uses: actions/checkout@v4 + + - uses: r-lib/actions/setup-r@v2 + with: + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::covr + needs: coverage + + - name: Test coverage + run: | + covr::codecov( + quiet = FALSE, + clean = FALSE, + install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") + ) + shell: Rscript {0} + + - name: Show testthat output + if: always() + run: | + ## -------------------------------------------------------------------- + find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true + shell: bash + + - name: Upload test results + if: failure() + uses: actions/upload-artifact@v4 + with: + name: coverage-test-failures + path: ${{ runner.temp }}/package diff --git a/DESCRIPTION b/DESCRIPTION index 39e3f28..40d25de 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -8,7 +8,7 @@ Description: What the package does (one paragraph). License: MIT + file LICENSE Encoding: UTF-8 Roxygen: list(markdown = TRUE) -RoxygenNote: 7.2.3 +RoxygenNote: 7.3.1 Imports: Matrix, tibble, diff --git a/README.Rmd b/README.Rmd index 4fd7ff7..1ec1b35 100644 --- a/README.Rmd +++ b/README.Rmd @@ -17,6 +17,8 @@ set.seed(1234) # sparsevctrs +[![R-CMD-check](https://github.com/EmilHvitfeldt/sparsevctrs/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/EmilHvitfeldt/sparsevctrs/actions/workflows/R-CMD-check.yaml) +[![Codecov test coverage](https://codecov.io/gh/EmilHvitfeldt/sparsevctrs/branch/main/graph/badge.svg)](https://app.codecov.io/gh/EmilHvitfeldt/sparsevctrs?branch=main) THIS IS A PROTOTYPE. DO NOT USE diff --git a/README.md b/README.md index 4487807..b364b93 100644 --- a/README.md +++ b/README.md @@ -4,6 +4,10 @@ # sparsevctrs + +[![R-CMD-check](https://github.com/EmilHvitfeldt/sparsevctrs/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/EmilHvitfeldt/sparsevctrs/actions/workflows/R-CMD-check.yaml) +[![Codecov test +coverage](https://codecov.io/gh/EmilHvitfeldt/sparsevctrs/branch/main/graph/badge.svg)](https://app.codecov.io/gh/EmilHvitfeldt/sparsevctrs?branch=main) THIS IS A PROTOTYPE. DO NOT USE diff --git a/codecov.yml b/codecov.yml new file mode 100644 index 0000000..04c5585 --- /dev/null +++ b/codecov.yml @@ -0,0 +1,14 @@ +comment: false + +coverage: + status: + project: + default: + target: auto + threshold: 1% + informational: true + patch: + default: + target: auto + threshold: 1% + informational: true diff --git a/vignettes/articles/sparsevctrs-tidyop.Rmd b/vignettes/articles/sparsevctrs-tidyop.Rmd deleted file mode 100644 index e69de29..0000000