DESCRIPTION

Package: MEDIPS
Type: Package
Title: DNA IP-seq data analysis
Version: 1.23.0
Date: 2016-04-15
Author: Lukas Chavez, Matthias Lienhard, Joern Dietrich, Isaac Lopez Moyado
Maintainer: Lukas Chavez <l.chavez@dkfz.de>
Description: MEDIPS was developed for analyzing data derived from
        methylated DNA immunoprecipitation (MeDIP) experiments followed
        by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative
        sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others)
        including calculation of differential coverage between groups
        of samples and saturation and correlation analysis.
License: GPL (>=2)
LazyLoad: yes
Depends: R (>= 3.0), BSgenome, Rsamtools
Imports: GenomicRanges, Biostrings, graphics, gtools, IRanges,
        methods, stats, utils, edgeR,
        DNAcopy, biomaRt, rtracklayer, preprocessCore
Suggests: BSgenome.Hsapiens.UCSC.hg19, MEDIPSData, BiocStyle
biocViews: DNAMethylation, CpGIsland,
        DifferentialExpression, Sequencing, ChIPSeq, Preprocessing,
        QualityControl, Visualization, Microarray, Genetics, Coverage, GenomeAnnotation, CopyNumberVariation, SequenceMatching