TNTurnerLab

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18 repositories

CNPI
Public
Software for Rapid Analyses of Human Copy Number Data
bioinformatics genomics genome copy-number-variation genotype karyotype copy-number x-chromosome y-chromosome autosome
C++
•
MIT License
•0•3•0•0•Updated Feb 5, 2025Feb 5, 2025
Hare
Public
A de novo variant caller leveraging Parabricks GPU accelerated variant calling
genomics genetics gpu denovo
Python
•
MIT License
•0•6•0•0•Updated Nov 4, 2024Nov 4, 2024
ElGenomaPequeno
Public
El genoma pequeño - analysis workflow for "the little genome"
R
•
MIT License
•1•0•0•0•Updated Sep 25, 2024Sep 25, 2024
diamonds
Public
MIT License
•0•0•0•0•Updated May 21, 2024May 21, 2024
EBVDetector
Public
MIT License
•0•0•0•0•Updated May 5, 2024May 5, 2024
HAT
Public
HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
cpu genomics genetics gpu denovo
Python
•
MIT License
•0•23•1•0•Updated Mar 21, 2024Mar 21, 2024
fitDNM
Public
Code for running fitDNM genome-wide by using Snakemake
enrichment genomics genetics noncoding
Python
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MIT License
•0•4•0•0•Updated Mar 21, 2024Mar 21, 2024
ACES
Public
ACES is a workflow to query small sequences in a large set of genomes. It provides several outputs including BLAST results, a multiple sequence alignment file, a graphical fragment assembly file, and a phylogenetic tree file.
cloud genomics genetics conservation cromwell
Python
•
MIT License
•0•5•0•0•Updated Mar 21, 2024Mar 21, 2024
WTC-11
Public
WTC-11 Genome Cell Line Analysis
genome cell wgs wtc-11 auts2 linkedreads
MIT License
•0•1•0•0•Updated Feb 19, 2024Feb 19, 2024
3D-CLUMP
Public
Software to test for clustering of missense variants in 3D protein structures.
genomics cluster structure protein proteomics case-control missense
Python
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MIT License
•0•1•0•0•Updated Feb 15, 2024Feb 15, 2024
Revio_N2A
Public
TNTurnerLab Code for Revio Neuro-2a paper
genomics genetics methylation pacbio cells variation cell-lines revio
Shell
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MIT License
•0•0•0•0•Updated Feb 15, 2024Feb 15, 2024
HT22_genome_epigenome_functional_genomics_project
Public
hi-c rnaseq pacbio cells arima wgs illumina cell-lines
HTML
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MIT License
•0•4•0•0•Updated Feb 13, 2024Feb 13, 2024
clustering_in_cancer_vs_ndd_paper
Public
R
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MIT License
•0•1•0•0•Updated Feb 4, 2024Feb 4, 2024
Tortoise
Public
Tortoise is the CPU workflow of the HAT https://github.com/TNTurnerLab/HAT tools.
cpu genomics genetics denovo
Python
•
MIT License
•0•5•0•0•Updated Nov 9, 2023Nov 9, 2023
PYRUS
Public
PYRUS is a plotting tool that uses tabix files to create line graphs from bed file data. Utilization of PYRUS includes having a quick plotter for copy number variation within a given chromosomal range of a referenced bed file.
genomics genetics plot wgs cnv cnv-plot copy-number-variant
R
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MIT License
•0•4•0•0•Updated Sep 18, 2023Sep 18, 2023
acorn
Public
acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating features including variant change counts, lengths, and presence/absence at CpG sites; and characteristics of parental age and number of DNVs.
r genomics genome variants snv denovo indel mnv
R
•
MIT License
•0•6•0•0•Updated May 18, 2023May 18, 2023
wdl_workflows
Public
WDL
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MIT License
•0•0•0•0•Updated Jul 20, 2022Jul 20, 2022
GPU_accelerated_de_novo_workflow
Public
HARE is the GPU workflow of the HAT https://github.com/TNTurnerLab/HAT tools.
genomics genetics gpu denovo
Shell
•
MIT License
•0•4•0•0•Updated Aug 5, 2021Aug 5, 2021