understanding error messages using test-bot with github ci?

[ipatch]

Output of brew config

HOMEBREW_VERSION: 4.2.17-6-g0e9b2e3-dirty
ORIGIN: https://github.com/Homebrew/brew
HEAD: 0e9b2e3da1a1fe3d594dd15ca7b2d0d07827599d
Last commit: 3 weeks ago
Core tap origin: https://github.com/ipatch/homebrew-core.git
Core tap HEAD: 3b92359844dd1be3da5412c36b7c7340b61bf7f4
Core tap last commit: 10 weeks ago
Core tap branch: linuxbrew
Core tap JSON: 12 Mar 03:22 UTC
HOMEBREW_PREFIX: /home/capin/homebrew
HOMEBREW_REPOSITORY: /home/capin/homebrew
HOMEBREW_CELLAR: /home/capin/homebrew/Cellar
HOMEBREW_CASK_OPTS: []
HOMEBREW_DEVELOPER: set
HOMEBREW_EDITOR: nvim
HOMEBREW_GITHUB_API_TOKEN: set
HOMEBREW_MAKE_JOBS: 8
HOMEBREW_NO_ANALYTICS: set
HOMEBREW_NO_AUTO_UPDATE: set
HOMEBREW_NO_GITHUB_API: set
HOMEBREW_NO_INSTALL_CLEANUP: set
HOMEBREW_NO_INSTALL_FROM_API: set
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: set
HOMEBREW_SORBET_RUNTIME: set
HOMEBREW_TEMP: /opt/tmp
Homebrew Ruby: 3.1.4 => /home/capin/homebrew/Library/Homebrew/vendor/portable-ruby/3.1.4/bin/ruby
CPU: octa-core 64-bit haswell
Clang: 17.0.6
Git: 2.44.0 => /bin/git
Curl: 8.7.1 => /bin/curl
Kernel: Linux 6.8.4-arch1-1 x86_64 GNU/Linux
OS: Arch Linux
Host glibc: 2.39
/usr/bin/gcc: 13.2.1
/usr/bin/ruby: 3.0.6
glibc: N/A
gcc@11: N/A
gcc: 13.2.0
xorg: N/A

Output of brew doctor

Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry or file an issue; just ignore this. Thanks!

Warning: Suspicious https://github.com/Homebrew/homebrew-core git origin remote found.
The current git origin is:
  https://github.com/ipatch/homebrew-core.git

With a non-standard origin, Homebrew won't update properly.
You can solve this by setting the origin remote:
  git -C "/home/capin/homebrew/Library/Taps/homebrew/homebrew-core" remote set-url origin https://github.com/Homebrew/homebrew-core

Warning: Some installed kegs have no formulae!
This means they were either deleted or installed manually.
You should find replacements for the following formulae:
  certifi

Warning: Some installed formulae are deprecated or disabled.
You should find replacements for the following formulae:
  [email protected]

Warning: Unbrewed header files were found in /usr/local/include.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected header files:
  /usr/local/include/llvm-c/Analysis.h
  /usr/local/include/llvm-c/BitReader.h
  /usr/local/include/llvm-c/BitWriter.h
  /usr/local/include/llvm-c/Comdat.h
  /usr/local/include/llvm-c/Core.h
  /usr/local/include/llvm-c/DataTypes.h
  /usr/local/include/llvm-c/DebugInfo.h
  /usr/local/include/llvm-c/Disassembler.h
  /usr/local/include/llvm-c/DisassemblerTypes.h
  /usr/local/include/llvm-c/Error.h
  /usr/local/include/llvm-c/ErrorHandling.h
  /usr/local/include/llvm-c/ExecutionEngine.h
  /usr/local/include/llvm-c/ExternC.h
  /usr/local/include/llvm-c/IRReader.h
  /usr/local/include/llvm-c/Initialization.h
  /usr/local/include/llvm-c/LLJIT.h
  /usr/local/include/llvm-c/Linker.h
  /usr/local/include/llvm-c/Object.h
  /usr/local/include/llvm-c/Orc.h
  /usr/local/include/llvm-c/OrcEE.h
  /usr/local/include/llvm-c/Remarks.h
  /usr/local/include/llvm-c/Support.h
  /usr/local/include/llvm-c/Target.h
  /usr/local/include/llvm-c/TargetMachine.h
  /usr/local/include/llvm-c/Transforms/AggressiveInstCombine.h
  /usr/local/include/llvm-c/Transforms/Coroutines.h
  /usr/local/include/llvm-c/Transforms/IPO.h
  /usr/local/include/llvm-c/Transforms/InstCombine.h
  /usr/local/include/llvm-c/Transforms/PassManagerBuilder.h
  /usr/local/include/llvm-c/Transforms/Scalar.h
  /usr/local/include/llvm-c/Transforms/Utils.h
  /usr/local/include/llvm-c/Transforms/Vectorize.h
  /usr/local/include/llvm-c/Types.h
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  /usr/local/include/llvm/ADT/Any.h
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  /usr/local/include/llvm/ADT/DenseSet.h
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  /usr/local/include/llvm/ADT/ImmutableMap.h
  /usr/local/include/llvm/ADT/ImmutableSet.h
  /usr/local/include/llvm/ADT/IndexedMap.h
  /usr/local/include/llvm/ADT/IntEqClasses.h
  /usr/local/include/llvm/ADT/IntervalMap.h
  /usr/local/include/llvm/ADT/IntrusiveRefCntPtr.h
  /usr/local/include/llvm/ADT/MapVector.h
  /usr/local/include/llvm/ADT/None.h
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  /usr/local/include/llvm/ADT/SmallBitVector.h
  /usr/local/include/llvm/ADT/SmallPtrSet.h
  /usr/local/include/llvm/ADT/SmallSet.h
  /usr/local/include/llvm/ADT/SmallString.h
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  /usr/local/include/llvm/ADT/SparseMultiSet.h
  /usr/local/include/llvm/ADT/SparseSet.h
  /usr/local/include/llvm/ADT/Statistic.h
  /usr/local/include/llvm/ADT/StringExtras.h
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  /usr/local/include/llvm/ADT/StringMapEntry.h
  /usr/local/include/llvm/ADT/StringRef.h
  /usr/local/include/llvm/ADT/StringSet.h
  /usr/local/include/llvm/ADT/StringSwitch.h
  /usr/local/include/llvm/ADT/TinyPtrVector.h
  /usr/local/include/llvm/ADT/Triple.h
  /usr/local/include/llvm/ADT/Twine.h
  /usr/local/include/llvm/ADT/TypeSwitch.h
  /usr/local/include/llvm/ADT/UniqueVector.h
  /usr/local/include/llvm/ADT/Waymarking.h
  /usr/local/include/llvm/ADT/bit.h
  /usr/local/include/llvm/ADT/edit_distance.h
  /usr/local/include/llvm/ADT/fallible_iterator.h
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  /usr/local/include/llvm/ADT/ilist_node.h
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  /usr/local/include/llvm/Analysis/AliasAnalysis.h
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  /usr/local/include/llvm/Analysis/AliasSetTracker.h
  /usr/local/include/llvm/Analysis/AssumeBundleQueries.h
  /usr/local/include/llvm/Analysis/AssumptionCache.h
  /usr/local/include/llvm/Analysis/BasicAliasAnalysis.h
  /usr/local/include/llvm/Analysis/BlockFrequencyInfo.h
  /usr/local/include/llvm/Analysis/BlockFrequencyInfoImpl.h
  /usr/local/include/llvm/Analysis/BranchProbabilityInfo.h
  /usr/local/include/llvm/Analysis/CFG.h
  /usr/local/include/llvm/Analysis/CFGPrinter.h
  /usr/local/include/llvm/Analysis/CFLAliasAnalysisUtils.h
  /usr/local/include/llvm/Analysis/CFLAndersAliasAnalysis.h
  /usr/local/include/llvm/Analysis/CFLSteensAliasAnalysis.h
  /usr/local/include/llvm/Analysis/CGSCCPassManager.h
  /usr/local/include/llvm/Analysis/CallGraph.h
  /usr/local/include/llvm/Analysis/CallGraphSCCPass.h
  /usr/local/include/llvm/Analysis/CallPrinter.h
  /usr/local/include/llvm/Analysis/CaptureTracking.h
  /usr/local/include/llvm/Analysis/CmpInstAnalysis.h
  /usr/local/include/llvm/Analysis/CodeMetrics.h
  /usr/local/include/llvm/Analysis/ConstantFolding.h
  /usr/local/include/llvm/Analysis/ConstraintSystem.h
  /usr/local/include/llvm/Analysis/DDG.h
  /usr/local/include/llvm/Analysis/DDGPrinter.h
  /usr/local/include/llvm/Analysis/DOTGraphTraitsPass.h
  /usr/local/include/llvm/Analysis/Delinearization.h
  /usr/local/include/llvm/Analysis/DemandedBits.h
  /usr/local/include/llvm/Analysis/DependenceAnalysis.h
  /usr/local/include/llvm/Analysis/DependenceGraphBuilder.h
  /usr/local/include/llvm/Analysis/DivergenceAnalysis.h
  /usr/local/include/llvm/Analysis/DomPrinter.h
  /usr/local/include/llvm/Analysis/DomTreeUpdater.h
  /usr/local/include/llvm/Analysis/DominanceFrontier.h
  /usr/local/include/llvm/Analysis/DominanceFrontierImpl.h
  /usr/local/include/llvm/Analysis/EHPersonalities.h
  /usr/local/include/llvm/Analysis/FunctionPropertiesAnalysis.h
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  /usr/local/include/llvm/Analysis/GuardUtils.h
  /usr/local/include/llvm/Analysis/HeatUtils.h
  /usr/local/include/llvm/Analysis/IRSimilarityIdentifier.h
  /usr/local/include/llvm/Analysis/IVDescriptors.h
  /usr/local/include/llvm/Analysis/IVUsers.h
  /usr/local/include/llvm/Analysis/IndirectCallPromotionAnalysis.h
  /usr/local/include/llvm/Analysis/IndirectCallVisitor.h
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  /usr/local/include/llvm/Analysis/InstructionPrecedenceTracking.h
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  /usr/local/include/llvm/Analysis/LoopAnalysisManager.h
  /usr/local/include/llvm/Analysis/LoopCacheAnalysis.h
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  /usr/local/include/llvm/Analysis/LoopNestAnalysis.h
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  /usr/local/include/llvm/Analysis/MemorySSA.h
  /usr/local/include/llvm/Analysis/MemorySSAUpdater.h
  /usr/local/include/llvm/Analysis/ModuleDebugInfoPrinter.h
  /usr/local/include/llvm/Analysis/ModuleSummaryAnalysis.h
  /usr/local/include/llvm/Analysis/MustExecute.h
  /usr/local/include/llvm/Analysis/ObjCARCAliasAnalysis.h
  /usr/local/include/llvm/Analysis/ObjCARCAnalysisUtils.h
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  /usr/local/include/llvm/Analysis/ScalarEvolutionExpressions.h
  /usr/local/include/llvm/Analysis/ScalarEvolutionNormalization.h
  /usr/local/include/llvm/Analysis/ScopedNoAliasAA.h
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  /usr/local/include/llvm/Analysis/StackLifetime.h
  /usr/local/include/llvm/Analysis/StackSafetyAnalysis.h
  /usr/local/include/llvm/Analysis/SyncDependenceAnalysis.h
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  /usr/local/include/llvm/Analysis/TargetFolder.h
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  /usr/local/include/llvm/Analysis/Trace.h
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  /usr/local/include/llvm/Analysis/Utils/ImportedFunctionsInliningStatistics.h
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  /usr/local/include/llvm/Analysis/ValueTracking.h
  /usr/local/include/llvm/Analysis/VectorUtils.h
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  /usr/local/include/llvm/Bitcode/BitcodeReader.h
  /usr/local/include/llvm/Bitcode/BitcodeWriter.h
  /usr/local/include/llvm/Bitcode/BitcodeWriterPass.h
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  /usr/local/include/llvm/Bitstream/BitCodes.h
  /usr/local/include/llvm/Bitstream/BitstreamReader.h
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  /usr/local/include/llvm/CodeGen/CSEConfigBase.h
  /usr/local/include/llvm/CodeGen/CalcSpillWeights.h
  /usr/local/include/llvm/CodeGen/CallingConvLower.h
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  /usr/local/include/llvm/CodeGen/GlobalISel/CombinerHelper.h
  /usr/local/include/llvm/CodeGen/GlobalISel/CombinerInfo.h
  /usr/local/include/llvm/CodeGen/GlobalISel/ConstantFoldingMIRBuilder.h
  /usr/local/include/llvm/CodeGen/GlobalISel/GISelChangeObserver.h
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  /usr/local/include/llvm/CodeGen/GlobalISel/IRTranslator.h
  /usr/local/include/llvm/CodeGen/GlobalISel/InlineAsmLowering.h
  /usr/local/include/llvm/CodeGen/GlobalISel/InstructionSelect.h
  /usr/local/include/llvm/CodeGen/GlobalISel/InstructionSelector.h
  /usr/local/include/llvm/CodeGen/GlobalISel/InstructionSelectorImpl.h
  /usr/local/include/llvm/CodeGen/GlobalISel/LegalizationArtifactCombiner.h
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  /usr/local/include/llvm/CodeGen/GlobalISel/LegalizerHelper.h
  /usr/local/include/llvm/CodeGen/GlobalISel/LegalizerInfo.h
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  /usr/local/include/llvm/CodeGen/GlobalISel/LostDebugLocObserver.h
  /usr/local/include/llvm/CodeGen/GlobalISel/MIPatternMatch.h
  /usr/local/include/llvm/CodeGen/GlobalISel/MachineIRBuilder.h
  /usr/local/include/llvm/CodeGen/GlobalISel/RegBankSelect.h
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  /usr/local/include/llvm/CodeGen/GlobalISel/RegisterBankInfo.h
  /usr/local/include/llvm/CodeGen/GlobalISel/Utils.h
  /usr/local/include/llvm/CodeGen/ISDOpcodes.h
  /usr/local/include/llvm/CodeGen/IndirectThunks.h
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  /usr/local/include/llvm/CodeGen/LexicalScopes.h
  /usr/local/include/llvm/CodeGen/LinkAllAsmWriterComponents.h
  /usr/local/include/llvm/CodeGen/LinkAllCodegenComponents.h
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  /usr/local/include/llvm/CodeGen/LiveIntervalCalc.h
  /usr/local/include/llvm/CodeGen/LiveIntervalUnion.h
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  /usr/local/include/llvm/CodeGen/MIRParser/MIRParser.h
  /usr/local/include/llvm/CodeGen/MIRPrinter.h
  /usr/local/include/llvm/CodeGen/MIRYamlMapping.h
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  /usr/local/include/llvm/Transforms/Utils/SanitizerStats.h
  /usr/local/include/llvm/Transforms/Utils/ScalarEvolutionExpander.h
  /usr/local/include/llvm/Transforms/Utils/SimplifyCFGOptions.h
  /usr/local/include/llvm/Transforms/Utils/SimplifyIndVar.h
  /usr/local/include/llvm/Transforms/Utils/SimplifyLibCalls.h
  /usr/local/include/llvm/Transforms/Utils/SizeOpts.h
  /usr/local/include/llvm/Transforms/Utils/SplitModule.h
  /usr/local/include/llvm/Transforms/Utils/StripGCRelocates.h
  /usr/local/include/llvm/Transforms/Utils/StripNonLineTableDebugInfo.h
  /usr/local/include/llvm/Transforms/Utils/SymbolRewriter.h
  /usr/local/include/llvm/Transforms/Utils/UnifyFunctionExitNodes.h
  /usr/local/include/llvm/Transforms/Utils/UnifyLoopExits.h
  /usr/local/include/llvm/Transforms/Utils/UniqueInternalLinkageNames.h
  /usr/local/include/llvm/Transforms/Utils/UnrollLoop.h
  /usr/local/include/llvm/Transforms/Utils/VNCoercion.h
  /usr/local/include/llvm/Transforms/Utils/ValueMapper.h
  /usr/local/include/llvm/Transforms/Vectorize.h
  /usr/local/include/llvm/Transforms/Vectorize/LoadStoreVectorizer.h
  /usr/local/include/llvm/Transforms/Vectorize/LoopVectorizationLegality.h
  /usr/local/include/llvm/Transforms/Vectorize/LoopVectorize.h
  /usr/local/include/llvm/Transforms/Vectorize/SLPVectorizer.h
  /usr/local/include/llvm/Transforms/Vectorize/VectorCombine.h
  /usr/local/include/llvm/WindowsManifest/WindowsManifestMerger.h
  /usr/local/include/llvm/WindowsResource/ResourceProcessor.h
  /usr/local/include/llvm/WindowsResource/ResourceScriptToken.h
  /usr/local/include/llvm/WindowsResource/ResourceScriptTokenList.h
  /usr/local/include/llvm/XRay/BlockIndexer.h
  /usr/local/include/llvm/XRay/BlockPrinter.h
  /usr/local/include/llvm/XRay/BlockVerifier.h
  /usr/local/include/llvm/XRay/FDRLogBuilder.h
  /usr/local/include/llvm/XRay/FDRRecordConsumer.h
  /usr/local/include/llvm/XRay/FDRRecordProducer.h
  /usr/local/include/llvm/XRay/FDRRecords.h
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  /usr/local/include/llvm/XRay/FDRTraceWriter.h
  /usr/local/include/llvm/XRay/FileHeaderReader.h
  /usr/local/include/llvm/XRay/Graph.h
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  /usr/local/include/llvm/XRay/Profile.h
  /usr/local/include/llvm/XRay/RecordPrinter.h
  /usr/local/include/llvm/XRay/Trace.h
  /usr/local/include/llvm/XRay/XRayRecord.h
  /usr/local/include/llvm/XRay/YAMLXRayRecord.h

Warning: Unbrewed static libraries were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected static libraries:
  /usr/local/lib/libLLVMAArch64AsmParser.a
  /usr/local/lib/libLLVMAArch64CodeGen.a
  /usr/local/lib/libLLVMAArch64Desc.a
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  /usr/local/lib/libLLVMAArch64Utils.a
  /usr/local/lib/libLLVMAMDGPUAsmParser.a
  /usr/local/lib/libLLVMAMDGPUCodeGen.a
  /usr/local/lib/libLLVMAMDGPUDesc.a
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  /usr/local/lib/libLLVMAMDGPUInfo.a
  /usr/local/lib/libLLVMAMDGPUUtils.a
  /usr/local/lib/libLLVMARMAsmParser.a
  /usr/local/lib/libLLVMARMCodeGen.a
  /usr/local/lib/libLLVMARMDesc.a
  /usr/local/lib/libLLVMARMDisassembler.a
  /usr/local/lib/libLLVMARMInfo.a
  /usr/local/lib/libLLVMARMUtils.a
  /usr/local/lib/libLLVMAVRAsmParser.a
  /usr/local/lib/libLLVMAVRCodeGen.a
  /usr/local/lib/libLLVMAVRDesc.a
  /usr/local/lib/libLLVMAVRDisassembler.a
  /usr/local/lib/libLLVMAVRInfo.a
  /usr/local/lib/libLLVMAggressiveInstCombine.a
  /usr/local/lib/libLLVMAnalysis.a
  /usr/local/lib/libLLVMAsmParser.a
  /usr/local/lib/libLLVMAsmPrinter.a
  /usr/local/lib/libLLVMBPFAsmParser.a
  /usr/local/lib/libLLVMBPFCodeGen.a
  /usr/local/lib/libLLVMBPFDesc.a
  /usr/local/lib/libLLVMBPFDisassembler.a
  /usr/local/lib/libLLVMBPFInfo.a
  /usr/local/lib/libLLVMBinaryFormat.a
  /usr/local/lib/libLLVMBitReader.a
  /usr/local/lib/libLLVMBitWriter.a
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  /usr/local/lib/libLLVMCFGuard.a
  /usr/local/lib/libLLVMCodeGen.a
  /usr/local/lib/libLLVMCore.a
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  /usr/local/lib/libLLVMDebugInfoDWARF.a
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  /usr/local/lib/libLLVMExecutionEngine.a
  /usr/local/lib/libLLVMExtensions.a
  /usr/local/lib/libLLVMFileCheck.a
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  /usr/local/lib/libLLVMGlobalISel.a
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  /usr/local/lib/libLLVMInstrumentation.a
  /usr/local/lib/libLLVMInterfaceStub.a
  /usr/local/lib/libLLVMInterpreter.a
  /usr/local/lib/libLLVMJITLink.a
  /usr/local/lib/libLLVMLTO.a
  /usr/local/lib/libLLVMLanaiAsmParser.a
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  /usr/local/lib/libLLVMLanaiDisassembler.a
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  /usr/local/lib/libLLVMLibDriver.a
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  /usr/local/lib/libLLVMLinker.a
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  /usr/local/lib/libLLVMXCoreInfo.a
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Warning: You have unlinked kegs in your Cellar.
Leaving kegs unlinked can lead to build-trouble and cause formulae that depend on
those kegs to fail to run properly once built. Run `brew link` on these:
  util-linux
  qt
  berkeley-db
  [email protected]
  [email protected]
  python-lxml
  numpy
  hdf5-mpi
  hdf5
Error: /home/capin/homebrew/Cellar/qt/6.6.1 is not a directory

Description of issue

getting the below issue using the github provided ubuntu-22.04 runner image when attempting to build a bottle of [email protected] found in the homebrew-freecad tap.

==> Running Formulae#run!
Error: Failed to determine dependencies for 'freecad/freecad/[email protected]'.
Error: Process completed with exit code 1.

https://github.com/FreeCAD/homebrew-freecad/actions/runs/8883577762/job/24390715974?pr=500#step:17:51

unfortunately the below does not provide much context to why the build is failing.

ended up running the bottle command locally and did a little more output with error, but the local ad hoc bottle did build using the below command,

brew test-bot \
        --skip-online-checks \
        --only-formulae \
        --only-json-tab \
        --skip-recursive-dependents \
        --root-url=https://ghcr.io/v2/freecad/homebrew-freecad \
        [email protected]

i'm obviously missing something here, and will continue to investigate, but a helpful hand is always welcome.

[ipatch]

below some of the output from me running the same command locally on my arch linux install,

==> Running Formulae#run!

==> Running Formulae#formula!(freecad/freecad/[email protected])
==> brew deps --tree --annotate --include-build --include-test freecad/freecad/[email protected]
==> brew unlink ossp-uuid
==> Determining dependencies...
==> brew link ossp-uuid
==> brew link util-linux
==> FAILED
Error: Could not symlink share/man/man3/uuid.3
Target /home/capin/homebrew/share/man/man3/uuid.3
is a symlink belonging to ossp-uuid. You can unlink it:
  brew unlink ossp-uuid

To force the link and overwrite all conflicting files:
  brew link --overwrite util-linux

To list all files that would be deleted:
  brew link --overwrite util-linux --dry-run
Linking /home/capin/homebrew/Cellar/util-linux/2.39.3...

==> brew uninstall --force freecad/freecad/[email protected]
==> brew install --only-dependencies --verbose --build-bottle freecad/freecad/[email protected]
==> Starting tests for freecad/freecad/[email protected]
==> brew fetch --retry freecad/freecad/[email protected] --build-bottle