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Firstly thank you for developing this plugin for lammps.
The examples run the compute position command for all molecules in the system, along with the fix ordern command for all molecules. Specifically,
compute positions all position
fix f3 all ordern diffusivity 1000 100000 c_positions nb 10 nbe 25 file diffself.dat diffonsag.dat
If one is only interested to compute the position of a specific group of molecules (eg. methanol molecules in this example) and thence the ordern properties of those molecules, the commands will be modified into:
group met type 4 # The Oxygen of METHANOL molecules`
...
compute positions met position
fix f3 met ordern diffusivity 1000 100000 c_positions nb 10 nbe 25 file diffself.dat diffonsag.dat
The former ran perfectly well with the output file reading:
After that modification, the execution stopped when the fix ordern is invoked. No specific error was written in the log file or output files to allow troubleshooting myself.
Thank you.
Best wishes,
JY
The text was updated successfully, but these errors were encountered:
Hello,
Firstly thank you for developing this plugin for lammps.
The examples run the
compute position
command for all molecules in the system, along with thefix ordern
command for all molecules. Specifically,If one is only interested to compute the position of a specific group of molecules (eg. methanol molecules in this example) and thence the ordern properties of those molecules, the commands will be modified into:
The former ran perfectly well with the output file reading:
After that modification, the execution stopped when the
fix ordern
is invoked. No specific error was written in the log file or output files to allow troubleshooting myself.Thank you.
Best wishes,
JY
The text was updated successfully, but these errors were encountered: