Longer analysis time for WES

[CirclesYuan]

No description provided.

[CirclesYuan]

Multiple threads supporting feasible? BTW, GATK4 Pileup may output line without 7 columns, which may causes an error corresping as follows.

Traceback (most recent call last):
File "/path/to/Conpair/scripts/estimate_tumor_normal_contamination.py", line 96, in
pileup = ContaminationMarker.parse_mpileup_line(line, min_map_quality=MMQ)
File "/path/to/Conpair//modules/ContaminationMarker.py", line 71, in parse_mpileup_line
baseQs = baseQ2int(line[4])
IndexError: list index out of range