From a5f53252bab19f685815d5e7c3460b9ec18bb65c Mon Sep 17 00:00:00 2001 From: Nuno Fonseca Date: Thu, 12 Oct 2017 14:25:22 +0100 Subject: [PATCH] fix scheme name: 10xV1a Former-commit-id: 74ede35cb2f85cb78e064a41fc31aa3caa7d91d0 --- sh/fastq2bam | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sh/fastq2bam b/sh/fastq2bam index 61607a7..34c63fb 100755 --- a/sh/fastq2bam +++ b/sh/fastq2bam @@ -17,7 +17,7 @@ function perror { function usage() { echo "Usage: fastq2bam -a scheme -b out_bam -1 fastqfile1 [ -2 fastqfile2 -3 fastqfile3 -4 fastqfile4]" - echo "scheme: 10xV1 10xV1p 10xV2 drop-seq none" + echo "scheme: 10xV1 10xV1a 10xV2 drop-seq none" } function gen_bam() { @@ -96,7 +96,7 @@ if [ "$scheme-" == "10xV1-" ]; then fi -if [ "$scheme-" == "10xV1p-" ]; then +if [ "$scheme-" == "10xV1a-" ]; then # index1=*I1* # index2=*I2* # index3=read_RA*_2