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error waiting for container: invalid character 'u' looking for beginning of value + afni can not work #2475

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JXXCgit opened this issue Jul 22, 2021 · 1 comment
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@JXXCgit
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JXXCgit commented Jul 22, 2021

Hi, i am using fMRIPrep: 20.2.1
i tried to run : $ fmriprep-docker --fs-license-file license.txt/ fMRIanalysissession/Nifti fMRIanalysissession/derivatives participant
it works ,
but after one night"s running,
the error at the end comes out like this:
ERRO[40676] error waiting for container: invalid character 'u' looking for beginning of value

and another problem is: i tried to fun $ afni
messages comes out like this:
Precompiled binary linux_ubuntu_16_64: Jun 28 2021 (Version AFNI_21.1.20 'Domitian')
** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to JA Butman for useful feedback
Initializing: X11Error: Can't open display: localhost:0.0
++ AFNI is detached from terminal.
i can not run afni,

can anyone help me to figure out what the problems are?
thank you for your help,
greeting,
chen

@JXXCgit JXXCgit added the bug label Jul 22, 2021
@effigies
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Hi.

i tried to run : $ fmriprep-docker --fs-license-file license.txt/ fMRIanalysissession/Nifti fMRIanalysissession/derivatives participant
it works ,
but after one night"s running,
the error at the end comes out like this:
ERRO[40676] error waiting for container: invalid character 'u' looking for beginning of value

This seems to be a Docker issue: docker/for-mac#5139
There doesn't seem to be a clear cause or solution.

$ afni
messages comes out like this:
Precompiled binary linux_ubuntu_16_64: Jun 28 2021 (Version AFNI_21.1.20 'Domitian')
** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to JA Butman for useful feedback
Initializing: X11Error: Can't open display: localhost:0.0
++ AFNI is detached from terminal.
i can not run afni,

AFNI support is generally provided on https://afni.nimh.nih.gov/afni/community/board/list.php?1.

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