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Add module decoupleR to nf-core/modules #350

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atrigila opened this issue Nov 13, 2024 · 2 comments
Open

Add module decoupleR to nf-core/modules #350

atrigila opened this issue Nov 13, 2024 · 2 comments
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enhancement New feature or request

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atrigila commented Nov 13, 2024 •
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Description of feature

Add module decoupleR (and progeny)to nf-core/modules
@atrigila atrigila added the enhancement New feature or request label Nov 13, 2024
@atrigila atrigila mentioned this issue Nov 13, 2024
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@atrigila atrigila changed the title Add module PROGENy to nf-core/modules Add module decoupleR to nf-core/modules Nov 14, 2024
@atrigila atrigila self-assigned this Nov 14, 2024
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Decoupler is available in nf-core/modules but needs modifications to accept progeny data

@grst grst mentioned this issue Dec 3, 2024
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@grst grst moved this from on hold to ToDo - high priority in differentialabundance Dec 6, 2024
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grst commented Dec 10, 2024 •
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Yes, please take a look at the decoupler module and try to make it as generic as possible.
Integrating it into the pipeline is currently blocked by the development of a subworkflow for enrichment analyses (#384 )

@atrigila atrigila self-assigned this Dec 18, 2024
@atrigila atrigila moved this from ToDo - high priority to In progress in differentialabundance Dec 18, 2024
@atrigila atrigila mentioned this issue Dec 26, 2024
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