From b15b316a9ab531068b46391f9fb660ade7826ee5 Mon Sep 17 00:00:00 2001 From: daniel Date: Fri, 10 Nov 2023 15:36:23 +0100 Subject: [PATCH] update version in usage docs --- docs/usage.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/usage.md b/docs/usage.md index 74e2dcfc..38c2cc23 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -36,7 +36,7 @@ The typical command for running the pipeline is as follows: ```bash nextflow run nf-core/ampliseq \ - -r 2.7.0 \ + -r 2.7.1 \ -profile singularity \ --input "samplesheet.tsv" \ --FW_primer GTGYCAGCMGCCGCGGTAA \ @@ -45,7 +45,7 @@ nextflow run nf-core/ampliseq \ --outdir "./results" ``` -In this example, `--input` is the [Samplesheet input](#samplesheet-input), other options are [Direct FASTQ input](#direct-fastq-input) and [ASV/OTU fasta input](#asvotu-fasta-input). For more details on metadata, see [Metadata](#metadata). For [Reproducibility](#reproducibility), specify the version to run using `-r` (= release, e.g. 2.7.0, please use the most recent release). See the [nf-core/ampliseq website documentation](https://nf-co.re/ampliseq/parameters) for more information about pipeline specific parameters. +In this example, `--input` is the [Samplesheet input](#samplesheet-input), other options are [Direct FASTQ input](#direct-fastq-input) and [ASV/OTU fasta input](#asvotu-fasta-input). For more details on metadata, see [Metadata](#metadata). For [Reproducibility](#reproducibility), specify the version to run using `-r` (= release, e.g. 2.7.1, please use the most recent release). See the [nf-core/ampliseq website documentation](https://nf-co.re/ampliseq/parameters) for more information about pipeline specific parameters. It is possible to not provide primer sequences (`--FW_primer` & `--RV_primer`) and skip primer trimming using `--skip_cutadapt`, but this is only for data that indeed does not contain any PCR primers in their sequences. Also, metadata (`--metadata`) isnt required, but aids downstream analysis.