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b/scripts/developer_scripts/parse_mutational_fitness_tsv_into_distance_map.py @@ -10,7 +10,7 @@ Updated model outputs are available at https://github.com/bkotzen/sars-cov2-modeling following: -https://raw.githubusercontent.com/bkotzen/sars-cov2-modeling/main/2024-05-27/PyR0/mutations.tsv +https://raw.githubusercontent.com/bkotzen/sars-cov2-modeling/main/2024-07-22/PyR0/mutations.tsv """ import argparse import pandas as pd @@ -21,7 +21,7 @@ description="Convert mutational fitness values to an Augur distance map", formatter_class=argparse.ArgumentDefaultsHelpFormatter ) - parser.add_argument("--input", default="https://raw.githubusercontent.com/bkotzen/sars-cov2-modeling/main/2024-05-27/PyR0/mutations.tsv", help="TSV file of mutational effects") + parser.add_argument("--input", default="https://raw.githubusercontent.com/bkotzen/sars-cov2-modeling/main/2024-07-22/PyR0/mutations.tsv", help="TSV file of mutational effects") parser.add_argument("--output", default="defaults/mutational_fitness_distance_map.json", help="JSON file for augur distance") args = parser.parse_args()