From 067fc5e331306f06c777ff11ea2546cf8c16539f Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Wed, 1 May 2024 16:52:50 -0700 Subject: [PATCH] Group by week for 1m/2m Asia builds To be consistent with other 1m/2m builds (6a94e46896909fd292ba865355d5759875ba700c). --- .../nextstrain-gisaid-21L/builds.yaml | 16 ++++++++-------- .../nextstrain-gisaid/builds.yaml | 16 ++++++++-------- nextstrain_profiles/nextstrain-open/builds.yaml | 16 ++++++++-------- 3 files changed, 24 insertions(+), 24 deletions(-) diff --git a/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml b/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml index 24519a426..bc7e8b5be 100644 --- a/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml +++ b/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml @@ -313,25 +313,25 @@ subsampling: exclude: "--exclude-where 'region=Asia'" # Recent focal samples for Asia asia_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 1200 min_date: "--min-date 1M" exclude: "--exclude-where 'region!=Asia' 'country=China' 'country=India'" # Recent focal samples for China china_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 800 max_date: "--min-date 1M" exclude: "--exclude-where 'country!=China'" # Recent focal samples for India india_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 800 max_date: "--min-date 1M" exclude: "--exclude-where 'country!=India'" # Early contextual samples from the rest of the world context_recent: - group_by: "country year month" + group_by: "country week" max_sequences: 700 min_date: "--min-date 1M" exclude: "--exclude-where 'region=Asia'" @@ -370,25 +370,25 @@ subsampling: exclude: "--exclude-where 'region=Asia'" # Recent focal samples for Asia asia_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 1200 min_date: "--min-date 2M" exclude: "--exclude-where 'region!=Asia' 'country=China' 'country=India'" # Recent focal samples for China china_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 800 max_date: "--min-date 2M" exclude: "--exclude-where 'country!=China'" # Recent focal samples for India india_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 800 max_date: "--min-date 2M" exclude: "--exclude-where 'country!=India'" # Early contextual samples from the rest of the world context_recent: - group_by: "country year month" + group_by: "country week" max_sequences: 700 min_date: "--min-date 2M" exclude: "--exclude-where 'region=Asia'" diff --git a/nextstrain_profiles/nextstrain-gisaid/builds.yaml b/nextstrain_profiles/nextstrain-gisaid/builds.yaml index dfd006a28..4034e4730 100644 --- a/nextstrain_profiles/nextstrain-gisaid/builds.yaml +++ b/nextstrain_profiles/nextstrain-gisaid/builds.yaml @@ -305,25 +305,25 @@ subsampling: exclude: "--exclude-where 'region=Asia'" # Recent focal samples for Asia asia_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 1200 min_date: "--min-date 1M" exclude: "--exclude-where 'region!=Asia' 'country=China' 'country=India'" # Recent focal samples for China china_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 800 max_date: "--min-date 1M" exclude: "--exclude-where 'country!=China'" # Recent focal samples for India india_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 800 max_date: "--min-date 1M" exclude: "--exclude-where 'country!=India'" # Early contextual samples from the rest of the world context_recent: - group_by: "country year month" + group_by: "country week" max_sequences: 700 min_date: "--min-date 1M" exclude: "--exclude-where 'region=Asia'" @@ -362,25 +362,25 @@ subsampling: exclude: "--exclude-where 'region=Asia'" # Recent focal samples for Asia asia_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 1200 min_date: "--min-date 2M" exclude: "--exclude-where 'region!=Asia' 'country=China' 'country=India'" # Recent focal samples for China china_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 800 max_date: "--min-date 2M" exclude: "--exclude-where 'country!=China'" # Recent focal samples for India india_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 800 max_date: "--min-date 2M" exclude: "--exclude-where 'country!=India'" # Early contextual samples from the rest of the world context_recent: - group_by: "country year month" + group_by: "country week" max_sequences: 700 min_date: "--min-date 2M" exclude: "--exclude-where 'region=Asia'" diff --git a/nextstrain_profiles/nextstrain-open/builds.yaml b/nextstrain_profiles/nextstrain-open/builds.yaml index aa26e0101..40d5ff3ee 100644 --- a/nextstrain_profiles/nextstrain-open/builds.yaml +++ b/nextstrain_profiles/nextstrain-open/builds.yaml @@ -305,25 +305,25 @@ subsampling: exclude: "--exclude-where 'region=Asia'" # Recent focal samples for Asia asia_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 1200 min_date: "--min-date 1M" exclude: "--exclude-where 'region!=Asia' 'country=China' 'country=India'" # Recent focal samples for China china_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 800 max_date: "--min-date 1M" exclude: "--exclude-where 'country!=China'" # Recent focal samples for India india_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 800 max_date: "--min-date 1M" exclude: "--exclude-where 'country!=India'" # Early contextual samples from the rest of the world context_recent: - group_by: "country year month" + group_by: "country week" max_sequences: 700 min_date: "--min-date 1M" exclude: "--exclude-where 'region=Asia'" @@ -362,25 +362,25 @@ subsampling: exclude: "--exclude-where 'region=Asia'" # Recent focal samples for Asia asia_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 1200 min_date: "--min-date 2M" exclude: "--exclude-where 'region!=Asia' 'country=China' 'country=India'" # Recent focal samples for China china_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 800 max_date: "--min-date 2M" exclude: "--exclude-where 'country!=China'" # Recent focal samples for India india_recent: - group_by: "division year month" + group_by: "division week" max_sequences: 800 max_date: "--min-date 2M" exclude: "--exclude-where 'country!=India'" # Early contextual samples from the rest of the world context_recent: - group_by: "country year month" + group_by: "country week" max_sequences: 700 min_date: "--min-date 2M" exclude: "--exclude-where 'region=Asia'"