Activity
Deleted branch
Deleted branch
Phylogenetic: Use group-by with subsample-max-sequences
Phylogenetic: Use group-by with subsample-max-sequences
Phylogenetic: Update subsampling
Phylogenetic: Update subsampling
Phylogenetic: Filter to 4k sequences
Phylogenetic: Filter to 4k sequences
Latest alignment to Pathogen repo guide and add frequency panel #88
Latest alignment to Pathogen repo guide and add frequency panel #88
Deleted branch
Deleted branch
Drop set_final_strain_name.py
Drop set_final_strain_name.py
Force push
Drop set_final_strain_name.py
Drop set_final_strain_name.py
Force push
Drop set_final_strain_name.py
Drop set_final_strain_name.py
Tip frequency strain ID must match the displayed strain ID in the fin…
Tip frequency strain ID must match the displayed strain ID in the fin…
Automatically drop is_lab_host=true records during phylogenetic workflow
Automatically drop is_lab_host=true records during phylogenetic workflow
Deleted branch
Exclude outlier sequences flagged by Hill et al 2024 (#84)
Exclude outlier sequences flagged by Hill et al 2024 (#84)
Add frequencies panels
Add frequencies panels
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Update tip frequency min date
Update tip frequency min date
Fixup: display frequencies
Fixup: display frequencies
WIP: Add frequencies panel
WIP: Add frequencies panel
Automatically drop is_lab_host=true records during phylogenetic workflow
Automatically drop is_lab_host=true records during phylogenetic workflow
Phylogenetic: Change genbank_accession
to accession
Phylogenetic: Change
genbank_accession
to accession
Force push
Fixup
Fixup
Fixup: upload ncbi.ndjson
Fixup: upload ncbi.ndjson
Phylogenetic: Change genbank_accession
to accession
Phylogenetic: Change
genbank_accession
to accession
Rename phylogenetic/config to phylogenetic/defaults
Rename phylogenetic/config to phylogenetic/defaults
Ingest: change genbank_accession
to accession
Ingest: change
genbank_accession
to accession
Use authors and full_authors fields
Use authors and full_authors fields
Ingest: Re-align to pathogen-repo-guide
Ingest: Re-align to pathogen-repo-guide
Force push