From daf15cec212f996865e779d1f92cff703bd98abf Mon Sep 17 00:00:00 2001 From: Jover Lee Date: Mon, 6 Jan 2025 09:50:26 -0800 Subject: [PATCH] Update host map Removed an annotation that can be generalized with the host map. --- ingest/build-configs/ncbi/defaults/annotations.tsv | 1 - ingest/build-configs/ncbi/defaults/host-map.tsv | 10 ++++++++++ 2 files changed, 10 insertions(+), 1 deletion(-) diff --git a/ingest/build-configs/ncbi/defaults/annotations.tsv b/ingest/build-configs/ncbi/defaults/annotations.tsv index 2f65d90..790a0d8 100644 --- a/ingest/build-configs/ncbi/defaults/annotations.tsv +++ b/ingest/build-configs/ncbi/defaults/annotations.tsv @@ -14,4 +14,3 @@ A/PETFOOD/USA/24-037325-011/2024 host Avian # This sequence is likely from cat f A/PETFOOD/USA/24-037325-012/2024 host Avian # This sequence is likely from cat food, which is turkeyy https://apps.oregon.gov/oregon-newsroom/OR/ODA/Posts/Post/morasch-meats-voluntary-recall-feline-raw-pet-food-hpai A/PETFOOD/USA/24-037325-013/2024 host Avian # This sequence is likely from cat food, which is turkey https://apps.oregon.gov/oregon-newsroom/OR/ODA/Posts/Post/morasch-meats-voluntary-recall-feline-raw-pet-food-hpai A/Washington/OR/24-037325-011/2024 host Avian # This sequence is from Pet Food; like above it's likely turkey -A/Tiger/CA/24-036321-001-original/2024 host Nonhuman Mammal # New mammal, Panthera tigris diff --git a/ingest/build-configs/ncbi/defaults/host-map.tsv b/ingest/build-configs/ncbi/defaults/host-map.tsv index 766c0b6..d1a00b7 100644 --- a/ingest/build-configs/ncbi/defaults/host-map.tsv +++ b/ingest/build-configs/ncbi/defaults/host-map.tsv @@ -14,6 +14,7 @@ Aythya americana Avian bald eagle Avian black billed magpie Avian blackbird Avian +BOBCAT Nonhuman Mammal Bos taurus Cattle Branta canadensis Avian Bubo virginianus Avian @@ -49,6 +50,7 @@ feline Nonhuman Mammal Felis catus Nonhuman Mammal Gallus gallus Avian ganada goose Avian +GEOFFROY'S CAT Nonhuman Mammal goat Nonhuman Mammal goose Avian grackle Avian @@ -64,6 +66,7 @@ House-Mouse Nonhuman Mammal Icteridae Avian Larus occidentalis Avian Lophodytes cucullatus Avian +LYNX Nonhuman Mammal mallard Avian Meleagris gallopavo Avian Mephitidae Nonhuman Mammal @@ -71,20 +74,27 @@ mountain lion Nonhuman Mammal mountain_lion Nonhuman Mammal Mus musculus Nonhuman Mammal mute swan Avian +Numididae sp. Avian Panthera leo Nonhuman Mammal +Panthera tigris Nonhuman Mammal Passer domesticus Avian +Pavo Avian pefa Avian Pelecanus erythrorhynchos Avian pigeon Avian +Podiceps auritus Avian Procyon lotor Nonhuman Mammal Quiscalus quiscula Avian raccoon Nonhuman Mammal red fox Nonhuman Mammal red tailed hawk Avian Rock Pigeon Avian +SAVANNAH CAT Nonhuman Mammal +SERVAL Nonhuman Mammal skunk Nonhuman Mammal snow goose Avian Streptopelia decaocto Avian +Sus scrofa Nonhuman Mammal tiger Nonhuman Mammal Turdus merula Avian turkey Avian