diff --git a/Snakefile b/Snakefile
index 078d155..c13c928 100755
--- a/Snakefile
+++ b/Snakefile
@@ -436,7 +436,7 @@ rule export:
             --lat-longs {input.lat_longs} \
             --auspice-config {input.auspice_config} \
             --description {input.description} \
-            --include-root-sequence \
+            --include-root-sequence-inline \
             --output {output.auspice_json}
         """