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growth_cone_morph.xml
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<?xml version="1.0" encoding="utf-8"?>
<Morphology>
<!-- spine morphologies: width for sections along the spine -->
<!-- <SpineType id="filopodium"> -->
<!-- <Section width="0.4" at="0.0" regionClass="neck"/> -->
<!-- <Section width="0.4" at="3.0" regionClass="neck"/> -->
<!-- <Section width="0.4" at="3.0"/> -->
<!-- </SpineType> -->
<SpineType id="fake">
<Section width="0.05" at="0.00" label="stub"/>
<Section width="0.05" at="0.05" label="pointI"/>
</SpineType>
<!-- regionClass labels can apply to sections or segments and label regions for applying initial conditaions etc -->
<Segment id="seg1" region="axon1" label="stem1">
<start x="9.0" y="1.0" z="0.0" r="1."/>
<end x="10.5" y="1.0" z="0.0" r="1."/>
</Segment>
<Segment id="seg2" region="ERmembrane11">
<start on="seg1" at="end"/>
<end x="11.0" y="1.0" z="0.0" r="1."/>
</Segment>
<Segment id="seg3" region="ERmembrane12" >
<start on="seg2" at="end"/>
<end x="11.5" y="1.0" z="0.0" r="1.5"/>
</Segment>
<Segment id="seg4" region="axon2">
<start on="seg3" at="end"/>
<end x="12.5" y="1.0" z="0.0" r="2.5"/>
</Segment>
<Segment id="seg5" region="ERmembrane21">
<start on="seg4" at="end"/>
<end x="13.0" y="1.0" z="0.0" r="3.0"/>
</Segment>
<Segment id="seg6" region="ERmembrane22" >
<start on="seg5" at="end"/>
<end x="13.5" y="1.0" z="0.0" r="2.5"/>
</Segment>
<Segment id="seg7" region="axon3" >
<start on="seg6" at="end"/>
<end x="15.5" y="1.0" z="0.0" r="1." label="pointA"/>
</Segment>
<SpineAllocation id="fake1" spineType="fake" region="axon1"
lengthDensity="1000."/>
<SpineAllocation id="fake2" spineType="fake" region="axon2"
lengthDensity="1000."/>
<SpineAllocation id="fake3" spineType="fake" region="axon3"
lengthDensity="1000."/>
<SpineAllocation id="fake4" spineType="fake" region="ERmembrane11"
lengthDensity="4000."/>
<SpineAllocation id="fake5" spineType="fake" region="ERmembrane12"
lengthDensity="4000."/>
<SpineAllocation id="fake6" spineType="fake" region="ERmembrane21"
lengthDensity="4000."/>
<SpineAllocation id="fake7" spineType="fake" region="ERmembrane22"
lengthDensity="4000."/>
</Morphology>