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Originally, the AMOS' authors published only 600 labeled images in the "amos22.zip" archive. After supplementing the dataset code with the newest published data, e.g., "amos22_unlabeled_ct_5000_5399.zip", it stops working if only the initial data archive is provided.
Download instructions are also outdated, since they recommend to download only the initially published data, https://zenodo.org/record/7262581/files/amos22.zip. If I follow the instructions or just want to use labeled data only, I obtain the following error:
$ python
Python 3.10.4 (main, Mar 31 2022, 08:41:55) [GCC 7.5.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from amid.amos import AMOS
>>> ds = AMOS("/gpfs/gpfs0/m.belyaev/data/amos22")
>>> ds.ids
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/beegfs/home/b.shirokikh/amid/amid/amos/dataset.py", line 66, in ids
unlabelled = sorted(self._ids_unlabelled)
File "/trinity/home/b.shirokikh/miniconda3/lib/python3.10/functools.py", line 981, in __get__
val = self.func(instance)
File "/trinity/home/b.shirokikh/miniconda3/lib/python3.10/site-packages/jboc/_main.py", line 41, in wrapper
return func(decorated(*args_, **kwargs_), *args, **kwargs)
File "/beegfs/home/b.shirokikh/amid/amid/amos/dataset.py", line 182, in _ids_unlabelled
with ZipFile(self.root / archive) as zf:
File "/trinity/home/b.shirokikh/miniconda3/lib/python3.10/zipfile.py", line 1249, in __init__
self.fp = io.open(file, filemode)
FileNotFoundError: [Errno 2] No such file or directory: '/gpfs/gpfs0/m.belyaev/data/amos22/amos22_unlabeled_ct_5000_5399.zip'
>>>
It does not work both for amid-0.14.0 and amid-0.13.0.
First, we need to update download instructions. Secondly, do we need two versions of amid? or maybe optional behavior of one AMID class?
The text was updated successfully, but these errors were encountered:
Originally, the AMOS' authors published only 600 labeled images in the "amos22.zip" archive. After supplementing the dataset code with the newest published data, e.g., "amos22_unlabeled_ct_5000_5399.zip", it stops working if only the initial data archive is provided.
Download instructions are also outdated, since they recommend to download only the initially published data, https://zenodo.org/record/7262581/files/amos22.zip. If I follow the instructions or just want to use labeled data only, I obtain the following error:
It does not work both for amid-0.14.0 and amid-0.13.0.
First, we need to update download instructions. Secondly, do we need two versions of amid? or maybe optional behavior of one AMID class?
The text was updated successfully, but these errors were encountered: