From 0a0a37cea98e3cae330fdf8204341d2e9d69271b Mon Sep 17 00:00:00 2001 From: Max Date: Thu, 8 Jun 2023 01:52:17 +0300 Subject: [PATCH] fixed orientation for cl-detection --- amid/__version__.py | 2 +- amid/cl_detection.py | 5 +++-- 2 files changed, 4 insertions(+), 3 deletions(-) diff --git a/amid/__version__.py b/amid/__version__.py index f323a57b..ae4865cf 100644 --- a/amid/__version__.py +++ b/amid/__version__.py @@ -1 +1 @@ -__version__ = '0.11.0' +__version__ = '0.11.1' diff --git a/amid/cl_detection.py b/amid/cl_detection.py index ce1aa55a..22f222d2 100644 --- a/amid/cl_detection.py +++ b/amid/cl_detection.py @@ -3,7 +3,7 @@ import numpy as np import SimpleITK -from connectome import Source, Transform, meta +from connectome import Apply, Source, Transform, meta from connectome.interface.nodes import Silent from deli import load from imops import crop_to_box @@ -85,7 +85,8 @@ def spacing(i, _points): @classmethod def normalizer(cls): - return CropPadding() + # align the points' and image's axes + return Apply(points=lambda pts: {name: pt[::-1] for name, pt in pts.items()}) >> CropPadding() class CropPadding(Transform):