Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Vitals doesn't include many applicable SNOMED concepts #41

Open
sguptawustl opened this issue Aug 17, 2021 · 0 comments
Open

Vitals doesn't include many applicable SNOMED concepts #41

sguptawustl opened this issue Aug 17, 2021 · 0 comments

Comments

@sguptawustl
Copy link

For our site, we use the attached list of concepts/ancestors for all our vitals records. And out of 117 unique ancestors only one (4245997) is included in the NCATS vitals inclusion list (https://github.com/ncats/CTSA-Metrics/blob/master/Informatics%20Metric%20OMOP%20PostgreSQL.sql):

/* 
Spec: At least one vital: height, weight, blood pressure, BMI, or temperature
height
3036277
, weight
3025315
, blood pressure
45876174
, BMI
1002813
4245997
, temperature
1004059
4178505
# concepts exist in both meas and obs
*/

As a result our metric shows as if we have (almost) no vital signs data in our repository. Please advise how we should proceed for this particular item.

VitalsAncestorConceptId_WUSTL.txt

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant