diff --git a/.github/workflows/wait-for-pypi.py b/.github/workflows/wait-for-pypi.py
old mode 100644
new mode 100755
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 47b791d..8b37a02 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -4,7 +4,15 @@ ci:
autoupdate_branch: "develop"
autofix_prs: false # Comment "pre-commit.ci autofix" on a PR to trigger
+default_language_version:
+ python: python3.10
+
repos:
+ - repo: https://github.com/gitleaks/gitleaks
+ rev: v8.21.2
+ hooks:
+ - id: gitleaks
+
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v5.0.0
hooks:
@@ -23,32 +31,26 @@ repos:
- id: check-vcs-permalinks
- id: destroyed-symlinks
- id: detect-private-key
+ - id: end-of-file-fixer
- id: mixed-line-ending
- id: no-commit-to-branch # protects `main` by default
- id: debug-statements
- id: trailing-whitespace
- exclude: tests(/\w*)*/functional/t/trailing_whitespaces.py|tests/pyreverse/data/.*.html|doc/data/messages/t/trailing-whitespace/bad.py
- - id: end-of-file-fixer
- exclude: |
- (?x)^(
- tests(/\w*)*/functional/m/missing/missing_final_newline.py|
- tests/functional/t/trailing_newlines.py|
- doc/data/messages/t/trailing-newlines/bad.py|
- )$
- repo: https://github.com/astral-sh/ruff-pre-commit
- rev: v0.7.2
+ rev: v0.7.3
hooks:
- id: ruff
args: ["--fix", "--exit-non-zero-on-fix"]
- id: ruff-format
- - repo: https://github.com/psf/black
- rev: 24.8.0
- hooks:
- - id: black-jupyter
-
- repo: https://github.com/pre-commit/mirrors-mypy
rev: v1.13.0
hooks:
- id: mypy
+
+# TODO: Reconsider using the alexjs hook when there is a way to ignore particular warnings and/or files.
+# - repo: "https://github.com/mfisher87/alexjs-pre-commit-mirror"
+# rev: "v11.0.1" # Use the sha / tag you prefer
+# hooks:
+# - id: "alex"
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 48bdb51..e0748cd 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -8,6 +8,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Changed
+- update pre commit: to autoupdate and with gitleaks ([#147](https://github.com/nasa/batchee/pull/147))([**@danielfromearth**](https://github.com/danielfromearth))
+
## [1.2.0] - 2024-06-27
### Changed
diff --git a/README.md b/README.md
index 1bd7a03..62a6e21 100644
--- a/README.md
+++ b/README.md
@@ -8,9 +8,6 @@
-
-
-
diff --git a/batcher/harmony/cli.py b/batcher/harmony/cli.py
index 5d7504c..ca46570 100644
--- a/batcher/harmony/cli.py
+++ b/batcher/harmony/cli.py
@@ -25,6 +25,7 @@
# either express or implied. See the License for the specific language governing permissions and
# limitations under the License.
"""A Harmony CLI wrapper around the concatenate-batcher"""
+
from argparse import ArgumentParser
import harmony_service_lib
@@ -45,7 +46,8 @@ def main(config: harmony_service_lib.util.Config = None) -> None:
None
"""
parser = ArgumentParser(
- prog="Pre-concatenate-batching", description="Run the pre-concatenate-batching service"
+ prog="Pre-concatenate-batching",
+ description="Run the pre-concatenate-batching service",
)
harmony_service_lib.setup_cli(parser)
args = parser.parse_args()
diff --git a/batcher/harmony/util.py b/batcher/harmony/util.py
index 8f9055e..69d1aee 100644
--- a/batcher/harmony/util.py
+++ b/batcher/harmony/util.py
@@ -25,6 +25,7 @@
# either express or implied. See the License for the specific language governing permissions and
# limitations under the License.
"""Misc utility functions"""
+
from datetime import datetime
from pystac import Asset, Item
@@ -104,7 +105,10 @@ def _get_output_date_range(input_items: list[Item]) -> dict[str, str]:
start_datetime = min(start_datetime, new_start_datetime)
end_datetime = max(end_datetime, new_end_datetime)
- return {"start_datetime": start_datetime.isoformat(), "end_datetime": end_datetime.isoformat()}
+ return {
+ "start_datetime": start_datetime.isoformat(),
+ "end_datetime": end_datetime.isoformat(),
+ }
def _get_item_date_range(item: Item) -> tuple[datetime, datetime]:
diff --git a/batcher/tempo_filename_parser.py b/batcher/tempo_filename_parser.py
index ceb7c8a..842bbd7 100644
--- a/batcher/tempo_filename_parser.py
+++ b/batcher/tempo_filename_parser.py
@@ -25,6 +25,7 @@
# either express or implied. See the License for the specific language governing permissions and
# limitations under the License.
"""Holds the logic for grouping together data files based on their filenames."""
+
import logging
import re
from argparse import ArgumentParser
@@ -79,7 +80,8 @@ def main() -> list[list[str]]:
"""Main CLI entrypoint"""
parser = ArgumentParser(
- prog="batchee", description="Simple CLI wrapper around the granule batcher module."
+ prog="batchee",
+ description="Simple CLI wrapper around the granule batcher module.",
)
parser.add_argument(
"file_names",
diff --git a/poetry.lock b/poetry.lock
index d88fec4..793d5fa 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,64 +1,18 @@
-# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand.
-
-[[package]]
-name = "black"
-version = "24.10.0"
-description = "The uncompromising code formatter."
-optional = false
-python-versions = ">=3.9"
-files = [
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- {file = "black-24.10.0.tar.gz", hash = "sha256:846ea64c97afe3bc677b761787993be4991810ecc7a4a937816dd6bddedc4875"},
-]
-
-[package.dependencies]
-click = ">=8.0.0"
-mypy-extensions = ">=0.4.3"
-packaging = ">=22.0"
-pathspec = ">=0.9.0"
-platformdirs = ">=2"
-tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
-typing-extensions = {version = ">=4.0.1", markers = "python_version < \"3.11\""}
-
-[package.extras]
-colorama = ["colorama (>=0.4.3)"]
-d = ["aiohttp (>=3.10)"]
-jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
-uvloop = ["uvloop (>=0.15.2)"]
+# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand.
[[package]]
name = "boto3"
-version = "1.35.44"
+version = "1.35.61"
description = "The AWS SDK for Python"
optional = false
python-versions = ">=3.8"
files = [
- {file = "boto3-1.35.44-py3-none-any.whl", hash = "sha256:18416d07b41e6094101a44f8b881047dcec6b846dad0b9f83b9bbf2f0cd93d07"},
- {file = "boto3-1.35.44.tar.gz", hash = "sha256:7f8e8a252458d584d8cf7877c372c4f74ec103356eedf43d2dd9e479f47f3639"},
+ {file = "boto3-1.35.61-py3-none-any.whl", hash = "sha256:b86ddb1bb903fd0cd8fe69dc73ec2d317133f6731e90c0781f23398025471e64"},
+ {file = "boto3-1.35.61.tar.gz", hash = "sha256:b9d3c7c65182bcb63c48ee959abbcf4ef293c1e3f7cb866a0de4684345b5a16e"},
]
[package.dependencies]
-botocore = ">=1.35.44,<1.36.0"
+botocore = ">=1.35.61,<1.36.0"
jmespath = ">=0.7.1,<2.0.0"
s3transfer = ">=0.10.0,<0.11.0"
@@ -67,13 +21,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"]
[[package]]
name = "botocore"
-version = "1.35.44"
+version = "1.35.61"
description = "Low-level, data-driven core of boto 3."
optional = false
python-versions = ">=3.8"
files = [
- {file = "botocore-1.35.44-py3-none-any.whl", hash = "sha256:55388e80624401d017a9a2b8109afd94814f7e666b53e28fce51375cfa8d9326"},
- {file = "botocore-1.35.44.tar.gz", hash = "sha256:1fcd97b966ad8a88de4106fe1bd3bbd6d8dadabe99bbd4a6aadcf11cb6c66b39"},
+ {file = "botocore-1.35.61-py3-none-any.whl", hash = "sha256:6bf15cb459d71e53239474bf8a47c1cda0e309b8e05cbe61561fd70cf0c4551d"},
+ {file = "botocore-1.35.61.tar.gz", hash = "sha256:f6ddaa5f5eca2829ce5ed798d1cfee99479d5d4fb6d05fc20ca918d0dbe98d8f"},
]
[package.dependencies]
@@ -288,20 +242,6 @@ files = [
{file = "charset_normalizer-3.4.0.tar.gz", hash = "sha256:223217c3d4f82c3ac5e29032b3f1c2eb0fb591b72161f86d93f5719079dae93e"},
]
-[[package]]
-name = "click"
-version = "8.1.7"
-description = "Composable command line interface toolkit"
-optional = false
-python-versions = ">=3.7"
-files = [
- {file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"},
- {file = "click-8.1.7.tar.gz", hash = "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de"},
-]
-
-[package.dependencies]
-colorama = {version = "*", markers = "platform_system == \"Windows\""}
-
[[package]]
name = "colorama"
version = "0.4.6"
@@ -315,73 +255,73 @@ files = [
[[package]]
name = "coverage"
-version = "7.6.4"
+version = "7.6.5"
description = "Code coverage measurement for Python"
optional = false
python-versions = ">=3.9"
files = [
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]
[package.dependencies]
-coverage = {version = ">=5.2.1", extras = ["toml"]}
+coverage = {version = ">=7.5", extras = ["toml"]}
pytest = ">=4.6"
[package.extras]
@@ -738,29 +652,29 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
[[package]]
name = "ruff"
-version = "0.7.0"
+version = "0.7.3"
description = "An extremely fast Python linter and code formatter, written in Rust."
optional = false
python-versions = ">=3.7"
files = [
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+ {file = "ruff-0.7.3-py3-none-win32.whl", hash = "sha256:4ba81a5f0c5478aa61674c5a2194de8b02652f17addf8dfc40c8937e6e7d79fc"},
+ {file = "ruff-0.7.3-py3-none-win_amd64.whl", hash = "sha256:588a9ff2fecf01025ed065fe28809cd5a53b43505f48b69a1ac7707b1b7e4088"},
+ {file = "ruff-0.7.3-py3-none-win_arm64.whl", hash = "sha256:1713e2c5545863cdbfe2cbce21f69ffaf37b813bfd1fb3b90dc9a6f1963f5a8c"},
+ {file = "ruff-0.7.3.tar.gz", hash = "sha256:e1d1ba2e40b6e71a61b063354d04be669ab0d39c352461f3d789cac68b54a313"},
]
[[package]]
@@ -793,13 +707,13 @@ files = [
[[package]]
name = "tomli"
-version = "2.0.2"
+version = "2.1.0"
description = "A lil' TOML parser"
optional = false
python-versions = ">=3.8"
files = [
- {file = "tomli-2.0.2-py3-none-any.whl", hash = "sha256:2ebe24485c53d303f690b0ec092806a085f07af5a5aa1464f3931eec36caaa38"},
- {file = "tomli-2.0.2.tar.gz", hash = "sha256:d46d457a85337051c36524bc5349dd91b1877838e2979ac5ced3e710ed8a60ed"},
+ {file = "tomli-2.1.0-py3-none-any.whl", hash = "sha256:a5c57c3d1c56f5ccdf89f6523458f60ef716e210fc47c4cfb188c5ba473e0391"},
+ {file = "tomli-2.1.0.tar.gz", hash = "sha256:3f646cae2aec94e17d04973e4249548320197cfabdf130015d023de4b74d8ab8"},
]
[[package]]
@@ -832,4 +746,4 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
[metadata]
lock-version = "2.0"
python-versions = "^3.10"
-content-hash = "f511062d95b5f49b252af542fdfd48bb7e49c8b3ccc95f05a8e299453921546e"
+content-hash = "e717c604c388892940b2e503cf9d4f737eafcd72559dd072745cba040bca05f8"
diff --git a/pyproject.toml b/pyproject.toml
index 5be6b38..611ac8a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -23,7 +23,6 @@ batchee = 'batcher.tempo_filename_parser:main'
coverage = ">=7.4.4"
ruff = ">=0.4.1"
pytest = ">=8.1.1"
-black = ">=24.4.0"
mypy = ">=1.9.0"
pytest-cov = ">=5.0.0"
@@ -38,9 +37,6 @@ module = [
]
ignore_missing_imports = true
-[tool.black]
-line-length = 100
-
[tool.ruff]
builtins = ["ellipsis"]
exclude = [
@@ -48,6 +44,8 @@ exclude = [
"doc",
"_typed_ops.pyi",
]
+# Allow lines to be as long as 100.
+line-length = 100
target-version = "py310"
[tool.ruff.lint]
diff --git a/tests/test_harmony_adapter.py b/tests/test_harmony_adapter.py
index 2726a6e..f57d6e3 100644
--- a/tests/test_harmony_adapter.py
+++ b/tests/test_harmony_adapter.py
@@ -22,7 +22,6 @@ def test_service_invoke(self, temp_output_dir):
# test with both paged catalogs and un-paged catalogs
for in_catalog_name in ["catalog.json", "catalog0.json"]:
-
in_catalog_path = self.__harmony_path.joinpath("source", in_catalog_name)
test_args = [