forked from perabrahamsen/daisy-model
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathChangeLog.2
2486 lines (1700 loc) · 73.3 KB
/
ChangeLog.2
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
2003-06-12 Per Abrahamsen <[email protected]>
* Version 2.99 released.
2003-06-12 Per Abrahamsen <[email protected]>
* mathlib.h (_GLIBCPP_USE_C99): Define for MingW32.
* weather_std.C (precipitation_correction_key): New parameter.
(precipitation_correction_dai): New parameter.
(precipitation_correction): Removed.
(read_line): Update caller.
(initialize): Ditto.
(WeatherStandard): Ditto.
(WeatherStandardSyntax): Ditto.
2003-06-11 Per Abrahamsen <[email protected]>
* lib/all.dai: Added dk-horizon.dai.
* lib/dk-horizon.dai: Updated numbers.
2003-06-10 Per Abrahamsen <[email protected]>
* Version 2.98 released.
2003-06-06 Per Abrahamsen <[email protected]>
* plf.C (operator ()): Test for ==.
* time.C (load_syntax): Gave hour a default value of zero.
* uzlr.C (tick): Remove previous change.
2003-06-04 Per Abrahamsen <[email protected]>
* symbol.h: Port to GCC 3.3.
* summary_simple.C (summarize): Fixed 3.3 warning.
* root_system.C (tick_daily): Ditto.
* Version 2.97 released.
2003-06-02 Per Abrahamsen <[email protected]>
* groundwater.h, groundwater.C, groundwater_pipe.C (update_water):
Removed.
* soil_water.C (tick): Update caller.
* groundwater_pipe.C: Removed unused helper functions.
* uzlr.C (tick): Pre-calculate q_max.
* denitrification.C, denitrification.h (K_fast): New parameter.
2003-06-01 Per Abrahamsen <[email protected]>
* Version 2.96 released.
2003-05-27 Per Abrahamsen <[email protected]>
* groundwater.h, groundwater_deep.C, groundwater_file.C
* groundwater_fixed.C, groundwater_lysimeter.C, groundwater_pipe.C
* groundwater_static.C (tick): New h_surface argument.
* column_inorganic.C (tick): Update caller.
* column_std.C (tick): Ditto.
* uzlr.C (tick): Better handling of lake top.
* Version 2.95 released.
2003-05-27 Per Abrahamsen <[email protected]>
* uzlr.C (tick): Handle forced_flux.
* uzrichard.C (richard): Handle forced_flux.
* uzmodel.h (flux_bottom, is_lysimeter): Removed.
(type): Added.
* all: Updated callers and implementers.
* soil_water.C, soil_water.h (drain): New function.
* groundwater.h, groundwater_deep.C, groundwater_file.C
* groundwater_fixed.C, groundwater_lysimeter.C, groundwater_pipe.C
* groundwater_static.C (tick): New Soil, SoilWater and SoilHeat
arguments.
* column_std.C (tick): Update caller.
2003-05-26 Per Abrahamsen <[email protected]>
* Version 2.94 released.
2003-05-26 Per Abrahamsen <[email protected]>
* lib/dk-horizon.dai: Updated.
* groundwater_pipe.C (EquilibriumDrainFlow): Multiply with
anisotropy.
2003-05-23 Per Abrahamsen <[email protected]>
* groundwater_pipe.C, groundwater.C, groundwater.h (update_water):
Made 'q_p' and 'h_ice' const.
2003-05-22 Per Abrahamsen <[email protected]>
* Version 2.93 released.
2003-05-22 Per Abrahamsen <[email protected]>
* groundwater_pipe.C (extra_water_to_surface): New variable.
(update_water, RaisingGWT): Use it.
* groundwater.h, groundwater.C, groundwater_pipe.C (update_water):
Take UZtop and Trelog arguments.
* soil_water.C (tick): Update caller.
* Version 2.92 released.
2003-05-22 Per Abrahamsen <[email protected]>
* horizon.C, horizon.h (anisotropy): New parameter.
* soil.C, soil.h (anisotropy): Distribute it.
* groundwater_pipe.C (EquilibriumDrainFlow): Use it.
2003-05-21 Per Abrahamsen <[email protected]>
* Version 2.91 released.
2003-05-21 Per Abrahamsen <[email protected]>
* crop_simple.C (tick): Remove "==> " from messages.
* phenology_std.C (tick_daily): Ditto.
* phenology_TSum.C (tick_daily): Ditto.
* crop_std.C (tick): Ditto.
* daisy.h, daisy.C (print_time): New parameter.
* daisy.C (run): Obey it.
* action_crop.C (output, doIt, harvest, doIt, doIt): Remove brackets.
* action_tillage.C (doIt): Ditto.
* action_surface.C (doIt): Ditto.
* action_spray.C (doIt): Ditto.
* action_ridge.C (doIt): Ditto.
* action_sow.C (doIt): Ditto.
* action_merge.C (doIt): Ditto.
* action_irrigate.C (doIt) Ditto.
* action_heat.C (doIt): Ditto.
* action_harvest.C (doIt): Ditto.
* action_fertilize.C (doIt): Ditto.
* treelog.h (touch): New abstract function.
* treelog_dual.C (touch): Implemented it.
* treelog_stream.C (touch): Ditto.
* weather.h (daily_max_air_temperatur, daily_min_air_temperatur):
New abstract functions.
* weather_hourly.C: Implement them.
* weather_none.C: Ditto.
* weather_simple.C: Ditto.
* weather_std.C: Ditto.
* Version 2.90 released.
2003-05-21 Per Abrahamsen <[email protected]>
* lib/dk-horizon.dai: Regenerated with new parameters.
2003-05-19 Per Abrahamsen <[email protected]>
* Version 2.89 released.
2003-05-19 Per Abrahamsen <[email protected]>
* denitrification.C (alpha_fast, water_factor_fast): Changed.
(redox_height): New parameter.
(converted_redox): New log variable.
* lib/log.dai ("Denitrification"): Use it.
* weather_std.C (read_new_day): Don't throw an exception on
unmappable dates.
2003-05-15 Per Abrahamsen <[email protected]>
* Version 2.88 released.
2003-05-15 Per Abrahamsen <[email protected]>
* select_interval.C (output_array): Use Geometry::total (array) if
possible.
* hydraulic_M_vGp.C: New model.
* harvesting.C (DSnew): Clarified doumentation.
2003-05-14 Per Abrahamsen <[email protected]>
* Version 2.87 released.
2003-05-14 Per Abrahamsen <[email protected]>
* log_table.C (initial_match, initial_done): Move summary
initialization to initial_match.
* denitrification.C (tick): Use it.
(f_Theta): Removed.
(water_factor_fast, alpha_fast): New parameters.
(converted_fast, potential, potential_fast): New log variables.
* summary_simple.C (print_sum): New parameter.
* lib/log.dai ("Carbon Balance"): Removed CO2_fast.
* lib/log.dai ("Denitrification"): New log parameterization.
* organic_matter.C, organic_matter.h (CO2_fast): New member function.
* Version 2.86 released.
2003-05-14 Per Abrahamsen <[email protected]>
* lib/log.dai ("Total Water Balance"): New summary.
("Root Zone Water Balance"): Us it.
("NH4 Soil Balance", "NO3 Soil Balance"): New summaries.
("N Balance"): Use them.
("Carbon Balance"): Added summary.
2003-05-13 Per Abrahamsen <[email protected]>
* symbol.C (int2id): Negative integers are not fast.
* log.h (output): Removed possibility of outputing strings.
* all: Updated.
* geometry.C (add_layer): Removed superflous check.
* select.h: Use symbol instead of string for destination tags.
* log_extern.C, log_table.C: Update implementors.
* log_table.h: Use symbol instead of string for source tags.
* cdaisy.C: Update caller.
* log.h, log.C, log_table.C (summarize, initialize): New virtual
member functions.
* daisy.C (run): Call it.
* symbol.h, symbol.C (symbol): Allow default initializer.
* destination.C, destination.h: New utility.
* Makefile (OTHER): Added it.
* summary.C, summary.h: New component.
* Makefile (COMPONENTS): Added it.
(SUBMODELS): Moved nitrification.C to COMPONENTS.
* summary_simple.C: New model.
* Makefile (MODELS): Added it.
* log_table.C: Use it.
2003-05-12 Per Abrahamsen <[email protected]>
* Version 2.85 released.
2003-05-12 Per Abrahamsen <[email protected]>
* log_all.C (insert_active): Use iterators.
(match): Ditto.
(done): Ditto.
(initial_match): Ditto.
(initial_done): Ditto.
* Version 2.84 released.
2003-05-12 Per Abrahamsen <[email protected]>
* log_table.C (time_columns): New parameter.
* log.h (done): Take time argument.
* all: Update callers and implementors.
* lib/log.dai: Use it.
* uzlr.C (description): Fix sign. Reported by <[email protected]>.
(tick): Handle pressure top.
* Version 2.83 released.
2003-05-12 Per Abrahamsen <[email protected]>
* log.h (check_member): Split into check_leaf and check_interior.
* all: Updated callers and implementors.
* soil_water.C (initialize): Added log file message if automatic
macropores are added.
* Version 2.82 released.
* select.h, select.C, log_all.C: Minor speedups.
2003-05-12 Per Abrahamsen <[email protected]>
* Version 2.81 released.
2003-05-11 Per Abrahamsen <[email protected]>
* plf.C (slope): New member.
(operator ()): Speeded up.
* log_select.C (check_member,open,close,output): Moved to
'log_all.C'.
2003-05-09 Per Abrahamsen <[email protected]>
* Version 2.80 released.
2003-05-08 Per Abrahamsen <[email protected]>
* Version 2.79 released.
2003-05-08 Per Abrahamsen <[email protected]>
* log.C, log.h (initial_match, initial_done): New virtual members.
* log_all.C, log_all.h (initial_match, initial_done): Implemented.
* log_select.C, log_select.h (initial_match, initial_done): Ditto.
* daisy.C (initial_logs): New member function.
(logging): New member variable.
(tick_logs, tick): Use it.
* cdaisy.C (daisy_daisy_tick_time): Call it.
* weather_std.C (initialize): Read previous hour.
* select.h, select.C (interesting_content): New parameter.
* lib/log.dai: Specify it.
* cdaisy.C (daisy_daisy_tick_action): Call 'Action::tick'.
* parser_file.C (load_list): Add warning for parameters specified
twice.
* parser_file.C (add_derived): Ditto for duplicate parameterizations.
* organic_matter.C (root): Changed default value to 800
[kg/ha/y]. It used to be 1.20 Mg * 0.4, but that number did not
include rhizodeposition.
* Version 2.78 released.
2003-05-08 Per Abrahamsen <[email protected]>
* hydraulic_hypres.C (topsoil): New parameter.
* select_date.C: Resurrected.
* Makefile (MODELS): Added it.
* log.h (output): Restored virtual function.
* log_alist.C, log_select.C, log_select.h (output): Implement it.
* select.C, select.h (output_time): Restored virtual function.
2003-05-07 Per Abrahamsen <[email protected]>
* groundwater_pipe.C (K_aquitard): Changed default value from 1e-5
to 1e-4 [cm/h].
* txt/tutorial.tex (subsection{Groundwater and Drainage}): Updated.
* Version 2.77 released.
2003-05-07 Per Abrahamsen <[email protected]>
* lib/dk-horizon.dai: New file.
* lib/Makefile (DAISY): Added it.
2003-05-06 Per Abrahamsen <[email protected]>
* log_all.C: New utility.
* Makefile (SPECIALS): Added 'log_all.C'.
* daisy.C, daisy.h: Use it.
* log_select.C: Cleanups.
* select.h, select.C (flux): New parameter.
(match): Use it.
* log_select.C: Update caller.
* lib/log.dai: Updated.
* Makefile (OTHER, SUBMODEL): Moved 'time.C' to SUBMODEL.
2003-05-05 Per Abrahamsen <[email protected]>
* select.h, log_select.C: Cleanups and more speedups.
* Version 2.76 released.
2003-05-04 Per Abrahamsen <[email protected]>
* select.C, select_number.C, select_average.C, select_min.C,
select_max.C (output_number): Removed call to 'is_active'.
* select.C, select_array.C, select_content.C, select_flux_botton.C,
select_flux_top.C, select_index.C, select_interval.C
(output_array): Ditto.
* select.h (valid_level): New public data member.
* select.C (open_group, open, close): Update it.
* log_select.C (output): Use it.
2003-05-03 Per Abrahamsen <[email protected]>
* action_harvest.C (name, crop): Renamed 'name' to 'crop'.
2003-05-01 Per Abrahamsen <[email protected]>
* symbol.h, symbol.C: New utility.
* Makefile (OTHER): Added it.
* log_table1.C: No longer in use.
(MODELS): Removed.
(REMOVE): Added log_table1.C.
* Version 2.75 released.
2003-04-30 Per Abrahamsen <[email protected]>
* organic_matter.C (update_pools): Fix initialization order.
* txt/introduction.tex (subsection{Log File Generation}): Updated
example.
2003-04-29 Per Abrahamsen <[email protected]>
* groundwater_pipe.C (GroundwaterPipeSyntax): Explain about
aquitart horizon.
* soil.C (load_syntax): Ditto.
2003-04-28 Per Abrahamsen <[email protected]>
* Version 2.74 released.
2003-04-28 Per Abrahamsen <[email protected]>
* soil_water.C (initialize): Give error if h and Theta does not
match, and use h.
* horizon_std.C: Fixed comment.
* horizon.C (load_syntax): Removed 'Theta_res' and 'Theta_sat'
from hypres alist.
* groundwater.h, grgroundwater.C, groundwater_pipe.C
(Z_aquitard, K_aquitard, set_Z_aquitard): New virtual members.
* soil.C, soil.h (initialize): Made groundwater non-const.
* soil.C (initialize): New automatic aquitard horizon.
2003-04-25 Per Abrahamsen <[email protected]>
* Version 2.73 released.
2003-04-25 Per Abrahamsen <[email protected]>
* lib/log.dai ("Organic Matter"): Added SOM3.
2003-04-24 Per Abrahamsen <[email protected]>
* time.C, time.h: Made it a submodel.
* daisy.C (time): Use it.
* condition_time.C (time): Ditto.
* action_wait.C (end_time): Ditto.
* harvest.C (time): Ditto.
* harvesting.C (last_cut): Ditto.
* am.C (creation): Ditto.
* action_fertilize.C (doIt): Update caller.
* syntax.C, syntax.h (Syntax::Date): Removed.
* alist.h, alist.C: Removed support for Time values.
* document_LaTeX.C: Ditto.
* parser_file.C: Ditto.
* printer_file.C: Ditto.
* qmain_edit.C: Ditto.
* qmain_populate.C (enter_parameter): Ditto.
* select.C, select.h (output_time): Removed.
* select.C (load_syntax): Remeved reference to date types.
* log.h, log_select.C, log_select.h, log_alist.h, log_alist.C
* olog_table1.C (output): Cannot log time values.
* Makefile (MODELS): Removed 'select_date.C'.
* lib/log.dai: Updated callers.
* cdaisy.C, cdaisy.h (daisy_alist_get_time): Removed.
(daisy_alist_set_time): Ditto.
* txt/guide.tex (subsection{Date}): Removed.
* txt/introduction.tex: Removed references to at date type.
* parser_file.C (load_list): Don't force parentheses in alist in order.
* select_number.C (output_integer): New member function.
* parser_file.C (nest): Specify filename in treelog.
* options.C (Options): Don't specify filename here.
* txt/guide.tex (subsection{Files}): Fixed typo.
2003-04-22 Per Abrahamsen <[email protected]>
* Version 2.72 released.
2003-04-22 Per Abrahamsen <[email protected]>
* horizon.C, horizon.h (C_per_N): New parameter and member function.
* soil.C, soil.h (C_per_N): New member function.
* organic_matter.C (update_pools): Take new 'total_C_per_N'
argument.
(initialize): Update caller.
* Version 2.71 released.
2003-04-22 Per Abrahamsen <[email protected]>
* lib/log.dai ("Carbon Balance"): Added fast CO2.
2003-04-21 Per Abrahamsen <[email protected]>
* organic_matter.C (CO2_fast): New log variable.
(CO2_threshold): New parameter.
2003-04-16 Per Abrahamsen <[email protected]>
* Version 2.70 released.
2003-04-16 Per Abrahamsen <[email protected]>
* horizon.C, horizon.h (turnover_factor): New parameter.
* soil.C, soil.h (turnover_factor): New member function.
* organic_matter.C: Use it.
* horizon.C (rho_mineral, rho_humus, rho_water, rho_ice)
(c_fraction_in_humus): Added.
* horizon.h (rho_mineral, rho_humus, rho_water, rho_ice)
(c_fraction_in_humus): Removed.
* soil_heat.C (rho_water, rho_ice): Added constants.
* soil_water.C: Ditto.
* adsorption_freundlich.C (c_fraction_in_humus): Added.
* adsorption_linear.C: Ditto.
* soil.C, soil.h: Moved all member function definition to source
file.
* Version 2.69 released.
2003-04-16 Per Abrahamsen <[email protected]>
* mathlib.h (safe_pow): Added integer version.
2003-04-15 Per Abrahamsen <[email protected]>
* Version 2.68 released.
2003-04-15 Per Abrahamsen <[email protected]>
* organic_matter.C (SOM_limit_where, SOM_limit_lower)
(SOM_limit_upper): New parameters to the `init' submodel.
(partition, initialize) Use them.
* organic_matter.C (partition): Try to partition as topsoil if
subsoil partitioning does not work. This may happen if input is
too high, so SOM3 becomes negative.
* options.C (Options): Fix quote.
* treelog_dual.C (init_one): Ditto.
* hydraulic_hypres.C (initialize): Doc fix.
* hydraulic.C (check_K_sat): Doc fix.
2003-04-11 Per Abrahamsen <[email protected]>
* am.C (AM_Syntax): Changed "weight" dimension from "T w.w./ha"
to "Mg w.w./ha".
* units.C (standard_conversions): Added "T w.w./ha" as an alias
for "Mg w.w./ha".
* Version 2.67 released.
2003-04-11 Per Abrahamsen <[email protected]>
* hydraulic.C (K_at_h): New paramemter.
(initialize): Use it.
(check_K_sat): New function.
(load_K_sat): Use it.
2003-04-10 Per Abrahamsen <[email protected]>
* hydraulic.h, hydraulic.C (zero_Theta_res): Removed.
(K_sat): Moved here from subclasses.
* hydraulic.C (Hydraulic): Made 'Theta_res' and 'Theta_sat'
optional.
(load_syntax): Renamed to 'load_Theta_res'.
(load_Theta_sat): New function.
(load_K_sat): New function.
* hydraulic_*.C: Updated.
* hydraulic_hypres.C (initialize): Use parentheses in debug
messages.
* hydraulic_Cosby.C (initialize): Ditto.
* hydraulic.C (load_syntax): Renamed 'K_sat_range' to
'Theta_sat_range'.
* root_system.C (tick_day): Renamed from 'tick'.
(tick_hour): New function.
* phephenology.h, phephenology.C (soil_h): Removed parameter.
(soil_temperature, partial_soil_temperature): Moved to root system.
* root_system.h, root_system.C: Moved from phenology.
(tick_day): Renamed from 'tick'.
(tick_hour): New function.
* phephenology.h, phephenology.C, phenology_std.C,
phenology_TSum.C (emergence): Take h and T parameters.
* crop_std.C, crop_simple.C (tick): Update caller.
* canopy_simple.C (EpFac): Changed default to 1.15.
* Version 2.66 released.
2003-04-10 Per Abrahamsen <[email protected]>
* condition_time.C (match): Only match on Sundays.
* Version 2.65 released.
2003-04-10 Per Abrahamsen <[email protected]>
* lib/pea.dai ("Pea"): Ditto.
* lib/grass.dai ("Grass to grain"): Removed 'EpFac'.
* organic_matter.C (Initialization::variable_pool_2): New member.
(Initialization::net_mineralization): New member.
(partition): Use them.
(initialize): Update caller.
* organic_matter.C (partition): Added a few 'const's.
2003-04-09 Per Abrahamsen <[email protected]>
* Version 2.64 released.
2003-04-09 Per Abrahamsen <[email protected]>
* organic_matter.C (partition): Count initial aom content as part
of the humus.
* organic_matter.C (load_syntax): Added default SOM3 pool.
(Initialization::end): Made it a real member.
(partition): New 'top_soil' parameter.
(initialize): Update caller.
* soil.C (check): Allow 'SOM_fractions' to be smaller than
'som.size ()'.
* horizon.C, horizon.h (initialize): Ditto.
* column_base.C, column_base.h (initialize_common): Renamed from
'initialize'.
* column_inorganic.C, column_std.C (initialize): Update caller.
* organic_matter.C (partition): Made it const.
(update_pools): New member function.
(initialize): Update caller.
* organic_matter.C (Initialization::variable_pool): New member.
(partition): Use it.
(initialize): Update caller.
* Version 2.63 released.
2003-04-08 Per Abrahamsen <[email protected]>
* root_system.C, root_system.h (tick): Take T parameter instead of
'soil_heat'.
* crop_std.C (tick): Update caller.
* crop_simple.C (tick): Ditto.
* root_system.C, root_syste.h (DptEmr): Removed parameter.
* crop_std.C (tick): Use 'Depth' instead of 'DptEmr'.
* root_system.C, root_system.h (PenClayFac): New parameter.
* root_system.C (tick): use it.
* Makefile (REMOVE): Added development.C and development.h.
(SUBMODELS): Removed them.
2003-04-04 Per Abrahamsen <[email protected]>
* om.C (turnover): Added assertion.
2003-04-02 Per Abrahamsen <[email protected]>
* mathlib.h (safe_pow, safe_sqrt, safe_log, safe_acos, safe_asin):
New functions.
(pow, sqrt, log, acos, asin): Use them.
2003-03-27 Per Abrahamsen <[email protected]>
* Version 2.62 released.
2003-03-27 Per Abrahamsen <[email protected]>
* fao.C, fao.h: New utility.
* Makefile (OTHER): Added it.
* pet_PM.C, pet_PM.h: Move FAO utilites.
* bioclimate.C, bioclimate.h: Ditto.
* weather.C, weather.h: Ditto.
(elevation): New function.
* pet_makkink.C: Update caller.
* weather_old.C: Ditto.
* weather_std.C: Ditto.
* weather.C (tick_after): Use hourly extraterrestrial radiation
for hourly claudiness.
2003-03-26 Per Abrahamsen <[email protected]>
* gaussj.C (solve): Check for non-finite numbers.
* svat_pmsw.C (tick): Give error if crop height > 2.5 m.
(gaussj): Commented out.
(tick): Use GaussJordan instead of gaussj.
Added many checks.
2003-03-20 Per Abrahamsen <[email protected]>
* svat_pmsw.C (gaussj): Throw instead of exit on error.
(tick): Catch errors here.
2003-03-06 Per Abrahamsen <[email protected]>
* Version 2.61 released.
2003-03-06 Per Abrahamsen <[email protected]>
* syntax.h (check_list_fun): Removed.
* syntax.C, syntax.h (add_checks): Removed.
* syntax.C (list_checker): Removed.
(check): Updated caller.
* rootdens_PLF.C (Check_Indexes): New member class.
(check_alists): Removed.
(updated): Use it.
(Rootdens_DS_Depth_Syntax): Update.
* vcheck.h, vcheck.C (MinSize): New member class.
(min_size_1): New static member function.
* geometry.C (CheckLayers): New class.
(initialize_layer): use it.
(check_layers): Removed.
(load_syntax): Use VCheck.
(check_alist): Emptied.
* Version 2.60 released.
2003-03-06 Per Abrahamsen <[email protected]>
* om.C (turnover_pool): Don't process tiny pools.
(turnover): Ignore very slow rates.
* aom.C (tick): Ignore small som fraction.
* geometry.C (add): Added checks.
(extract): Made it more numerically stable.
* assertion.C, assertion.h (non_negative): Nw member function.
* assertion.h (assert_non_negative): New macro.
* om.C: Added checks.
* organic_matter.C: Ditto.
* Version 2.59 released.
2003-03-05 Per Abrahamsen <[email protected]>
* syntax.C (add_checks): Renamed from 'add_check'.
* geometry.C (add_layer): Update caller.
* rootdens_PLF.C (load_syntax): Ditto.
* assertion.C, assertion.h (error, warning, debug): New functions.
* assertion.C (failure, bug, warning): Use them.
* assertion.C (failure, panic): Removed unnecessary parentheses.
* organic_matter.C (input_from_am): The som buffer does not have
an efficiency.
* log_harvest.C (check): Check for write error.
* log_table1.C (check): Ditto.
* log_table.C (check): Ditto.
* log_checkpoint.C (done): Warn for write error.
* lib/log.dai ("Carbon Balance"): Accumulate C_Loss.
* Version 2.58 released.
2003-03-05 Per Abrahamsen <[email protected]>
* organic_matter.C (Initialization): Mix input from roots in
plowing layer.
2003-03-04 Per Abrahamsen <[email protected]>
* aom.C, om.C, smb.C: Added check.
* Version 2.57 released.
2003-03-04 Per Abrahamsen <[email protected]>
* canopy_std.C (CanopyStructure): Added some consts.
* action_sow.C (diIt): Added space to message.
2003-03-03 Per Abrahamsen <[email protected]>
* txt/dwf.tex (chapter{Daisy Weather File Format}): Warn about
specifying End a few days before the end of the file.
* lib/weather.dwf (End): Ditto
2003-02-28 Per Abrahamsen <[email protected]>
* Version 2.56 released.
2003-02-28 Per Abrahamsen <[email protected]>
* tmpstream.h: Added GCC 2.95 support.
* vcheck.C: Ditto.
* printer_file.C, printer_file.h (print_string): Exported.
* document_LaTeX.C (print_string): New function.
* document_LaTeX.C (print_sample_ordered, print_sample_entry)
(print_sample_header): Use it.
* document_LaTeX.C (print_entry_value, print_entry_category)
(print_entry_type, print_entry_submodel): Remove redundant arguments.
(print_submodel_entry): Update caller.
(print_sample_entry): Print simple default value.
* document.C (print_sample): Update caller.
* txt/introduction.tex (subsection{Sample}): Describe it.
2003-02-27 Per Abrahamsen <[email protected]>
* am.C, am.h (check_om_pools): New function.
* am.C (AM_Syntax): Use it.
* bioincorporation.C (load_syntax): Use it.
* bioincorporation.C (load_syntax): Added checks.
* Version 2.55 released.
2003-02-27 Per Abrahamsen <[email protected]>
* lib/fertilizer.dai (horse_manure): Change 'NH4_evaporation' to
'volatilization'.
* am.C (get_NH4, get_volatilization, check_organic, AM_Syntax):
Removed the obsolete NH4_evaporation parameter.
* harvesting.C (load_syntax): Clarify doc string.
* document.C (print_submodel, print_document, print_sample):
Removed MS-for hack.
* printer_file.C (print_alist): Ditto.
* plf.C (operator +): Ditto.
* document.C (print_submodel, print_document): Ditto.
* depend.C (resequence): Ditto.
* om.h, om.C, aom.h, aom.C (initial_fraction): Moved parameter
from OM to AOM.
* clayom_biomod.C (set_rates): Added checks.
* soil_water.h: Undid last change.
2003-02-26 Per Abrahamsen <[email protected]>
* Version 2.54 released.
2003-02-26 Per Abrahamsen <[email protected]>
* soil_water.h: Use namespace std to see if that help performance
on MinGW.
* organic_matter.C (partition): More debug code.
* Version 2.53 released.
2003-02-26 Per Abrahamsen <[email protected]>
* organic_matter.C (partition): Fix throw of tmp object.
2003-02-25 Per Abrahamsen <[email protected]>
* organic_matter.C (partition): BCC warning.
* crpn.C, crpn.h (NO3_root_min, NH4_root_min): New parameters.
* root_system.C (solute_uptake): New 'C_root_min' argument.
(nitrogen_uptake): Update caller.
(nitrogen_uptake): New 'NO3_root_min' and 'NH4_root_min'
parameters.
* crop_simple.C (tick): Update caller.
* crpn.C (update): Update caller.
2003-02-24 Per Abrahamsen <[email protected]>
* Version 2.52 released.
2003-02-24 Per Abrahamsen <[email protected]>
* Version 2.51 released.
2003-02-24 Per Abrahamsen <[email protected]>
* organic_matter.C (partition): SOM pools are not affected by
efficiency.
2003-02-22 Per Abrahamsen <[email protected]>
* Version 2.50 released.
2003-02-22 Per Abrahamsen <[email protected]>
* vcheck.C, vcheck.h (SumEqual): Made it a member of VCheck.
(StartValue, EndValue, FixedPoint, All): New checks.
* macro_std.C (load_syntax): Use them.
(check_alist): Removed duplicate check.
(check_alist): Added check that end pressure is lower than initial
pressure.
* macro_std.C (pressure_initiate, pressure_end): Added default
values.
* macro_std.C, macro.h (create): New function.
* soil_water.C (initialize): Use it.
* macro.C, macro.h, macro_none.C (none): New predicate.
* soil_water.C (initialize): Use it.
* groundwater.C, groundwater.h, groundwater_pipe.C (is_pipe,
pipe_height): New functions.
* geometry.C (initialize_zplus): Use them.
* soil_water.C (initialize): Use them.
* geometry.C, geometry.h (initialize_zplus): New 'max_interval'
parameter.
* soil.C (initialize): Update caller.
* assertion.C (message): Use cerr if no logs are defined.
(failure, panic): Throw an int instead of calling exit.
* main.C (main): Catch ints.
2003-02-21 Per Abrahamsen <[email protected]>
* soil_water.C, soil_water.g (Implementation, impl): Moved
everything to impl.
(macro): Made it optional.
2003-02-20 Per Abrahamsen <[email protected]>
* Version 2.49 released.
2003-02-20 Per Abrahamsen <[email protected]>
* parser_file.C (load_list): Hande integer sequences.
* organic_matter.C (Initialization, partition, initialize): More
debug support.
2003-02-19 Per Abrahamsen <[email protected]>
* syntax.C (check): Made "key" const.
* om.C (load_syntax): Make sure "initial_fraction" is a fraction.
(check_alist): Removed dead code.
* am.C (initialize): Don't assume "initial_fraction" is specified.
(AM_Syntax): Ditto.
2003-02-18 Per Abrahamsen <[email protected]>
* Version 2.48 released.
2003-02-18 Per Abrahamsen <[email protected]>
* all: BCC 5.0.1 fixes.
2003-02-17 Per Abrahamsen <[email protected]>
* am.C (AM_Syntax): Use Mg instead of T (or t).
* vegetation_permanent.C (VegetationPermanentSyntax) Ditto.
* crop_simple.C (CropSimpleSyntax): Ditto.
* lib/log.dai: Use Mg instead of Ton.
2003-02-16 Per Abrahamsen <[email protected]>
* soil.C (end_of_first_horizon): New function.
* gaussj.C, gaussj.h: New utility.
* Makefile (OTHER): Add it.
* horizon.C, horizon.h, soil.h (SOM_C, SOM_C_per_N): Removed.
(humus_C, SOM_C_per_N, SOM_fractions): New functions.
* mathlib.C (rate_to_halftime): New function.
* organic_matter.C (input_from_am, partition): New functions.
(Initialization) New submodel.
(initialize): Use them
(check_alist): More checks.
* weather.C, weather.h (average_temperature): New function.
* organic_matter.C (initialize): Take new T_avg argument.
* column_std.C (initialize): Update caller.
* column_std.C, column_base.C (initialize): Move Treelog header to
ColumnStandard.
* column_inorganic.C (initialize): New function.
2003-02-14 Per Abrahamsen <[email protected]>
* common.h: Cleanup.
* Version 2.47 released.
2003-02-14 Per Abrahamsen <[email protected]>
* parser_file.C (load_list): Be more strict with parentheses.
* txt/introduction.tex (subsection{Management}): Fixed example.
* weather_std.C (check): Fixed spelling error.
* hydraulic_hypres.C, hydraulic_Cosby.C (set_porosity, output):
Prevent Theta_sat from being modified.
2003-02-13 Per Abrahamsen <[email protected]>
* common.h: Cleanup.