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modules.json
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{
"name": "mskcc/neoantigenpipeline",
"homePage": "https://github.com/mskcc/neoantigenpipeline",
"repos": {
"https://github.com/mskcc-omics-workflows/modules.git": {
"modules": {
"msk": {
"neoantigenediting/aligntoiedb": {
"branch": "develop",
"git_sha": "34505c4c67eabebab927561d3a8fca87c9efe788",
"installed_by": ["modules", "neoantigen_editing"]
},
"neoantigenediting/computefitness": {
"branch": "develop",
"git_sha": "05e49188ee9407e1b51dfb1a49d8b6133e9276bc",
"installed_by": ["modules", "neoantigen_editing"]
},
"neoantigenutils/convertannotjson": {
"branch": "develop",
"git_sha": "34505c4c67eabebab927561d3a8fca87c9efe788",
"installed_by": ["modules"]
},
"neoantigenutils/formatnetmhcpan": {
"branch": "develop",
"git_sha": "e6bbb12a2dc237b9ea18163e96dbe9d780ddce5f",
"installed_by": ["modules", "netmhcstabandpan"]
},
"neoantigenutils/generatehlastring": {
"branch": "develop",
"git_sha": "34505c4c67eabebab927561d3a8fca87c9efe788",
"installed_by": ["modules", "netmhcstabandpan"]
},
"neoantigenutils/generatemutfasta": {
"branch": "develop",
"git_sha": "e6bbb12a2dc237b9ea18163e96dbe9d780ddce5f",
"installed_by": ["modules", "netmhcstabandpan"]
},
"neoantigenutils/neoantigeninput": {
"branch": "develop",
"git_sha": "003587a171d6cfa80bc894950d212add9f206f88",
"installed_by": ["modules"]
},
"netmhc3": {
"branch": "develop",
"git_sha": "9baf08c136733d9e4c0b16c169b7eebfb98d3291",
"installed_by": ["modules", "netmhcstabandpan"]
},
"netmhcpan": {
"branch": "main",
"git_sha": "503abeb67260f060d8228221b07d743aa4180345",
"installed_by": ["modules"]
},
"netmhcpan4": {
"branch": "develop",
"git_sha": "e64e6e100302131d575881363a9632936499918d",
"installed_by": ["modules", "netmhcstabandpan"]
},
"netmhcstabpan": {
"branch": "develop",
"git_sha": "3c39dd8d3d0a92aa33fda4352749e35fc22d3e87",
"installed_by": ["modules", "netmhcstabandpan"]
},
"phylowgs/createinput": {
"branch": "develop",
"git_sha": "05e49188ee9407e1b51dfb1a49d8b6133e9276bc",
"installed_by": ["phylowgs"]
},
"phylowgs/multievolve": {
"branch": "develop",
"git_sha": "980c1328a92a6cc547834ccc361c5187d0927944",
"installed_by": ["phylowgs"]
},
"phylowgs/parsecnvs": {
"branch": "develop",
"git_sha": "34505c4c67eabebab927561d3a8fca87c9efe788",
"installed_by": ["phylowgs"]
},
"phylowgs/writeresults": {
"branch": "develop",
"git_sha": "34505c4c67eabebab927561d3a8fca87c9efe788",
"installed_by": ["phylowgs"]
}
}
},
"subworkflows": {
"msk": {
"neoantigen_editing": {
"branch": "develop",
"git_sha": "56a628201401866096d6307b9e8c690c5eb46ac2",
"installed_by": ["subworkflows"]
},
"netmhcstabandpan": {
"branch": "develop",
"git_sha": "307cbffd9077e238176acb5044f9db85784e8aad",
"installed_by": ["subworkflows"]
},
"phylowgs": {
"branch": "develop",
"git_sha": "a5d61394af346f21ee2eb7ecfd97ab25bdbd1d0e",
"installed_by": ["subworkflows"]
}
}
}
},
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "3aa0aec1d52d492fe241919f0c6100ebf0074082",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
"installed_by": ["subworkflows"]
}
}
}
}
}
}