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Error logging in using the lemon-donkey profile whilst loading a saved workspace #145

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nakikkertumcg opened this issue Feb 4, 2025 · 1 comment
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@nakikkertumcg
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  • Logging in as a researcher to lemon-donkey works fine if you don't load a saved workspace
  • Logging in to xenon with a workspace saved in xenon works fine
  • Logging in to lemon-donkey with a workspace saved in xenon works fine for eden
  • When trying to log in to lemon-donkey using a workspace saved in xenon for BiB and DNBC, you get the following error::
Logging into the collaborating servers
  Login bib [=============>--------------------------------------------------------------]  18% /11sError: Internal server error: org.molgenis.r.exceptions.RExecutionException: org.molgenis.r.exceptions.RExecutionException: org.molgenis.r.rock.RockServerException: File upload failed: 

Full error from log:

2025-02-03 10:14:43.839 [http-nio-8080-exec-2|] ERROR o.a.c.c.C.[.[.[.[dispatcherServlet] - Servlet.service() for servlet [dispatcherServlet] in context with path [] threw exception [Request processing failed: java.util.concurrent.ExecutionException: org.molgenis.r.exceptions.RExecutionException: org.molgenis.r.exceptions.RExecutionException: org.molgenis.r.rock.RockServerException: File upload failed: ] with root cause
org.molgenis.r.rock.RockServerException: File upload failed: 
	at org.molgenis.r.rock.RockConnection.writeFile(RockConnection.java:103)
	at org.molgenis.r.service.RExecutorServiceImpl.copyFile(RExecutorServiceImpl.java:170)
	at org.molgenis.r.service.RExecutorServiceImpl.loadWorkspace(RExecutorServiceImpl.java:60)
	at org.molgenis.armadillo.command.impl.CommandsImpl$3.doWithConnection(CommandsImpl.java:147)
	at org.molgenis.armadillo.command.impl.CommandsImpl$3.doWithConnection(CommandsImpl.java:143)
	at org.molgenis.armadillo.command.impl.ArmadilloCommandImpl.evaluate(ArmadilloCommandImpl.java:125)
	at org.molgenis.armadillo.ArmadilloSession.execute(ArmadilloSession.java:34)
	at org.molgenis.armadillo.command.impl.CommandsImpl.lambda$schedule$2(CommandsImpl.java:106)
	at java.base/java.util.concurrent.CompletableFuture$AsyncSupply.run(CompletableFuture.java:1768)
	at org.molgenis.armadillo.command.CommandsConfig.lambda$executorService$0(CommandsConfig.java:38)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1144)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642)
	at java.base/java.lang.Thread.run(Thread.java:1589)
@timcadman timcadman self-assigned this Feb 4, 2025
@timcadman
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timcadman commented Feb 5, 2025

Appears to be related to size: the two largest workspaces didn't load but two smaller did:

server name size Successfully loaded
bib bib:exp-mh-2 126673362
bib bib:exp-mh-bak 122201639
bib bib:exp-mh 88665352
bib bib:exp-mh-2-bak 311

However, all of these workspaces load when logging in with Xenon profile

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