-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathstructure.Rmd
86 lines (64 loc) · 1.51 KB
/
structure.Rmd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
---
title: "Structure of DbMM analysis"
author: "Sudarshan"
date: "4/4/2021"
output: html_document
---
```{r eval=FALSE}
DbMM/
├── .gitignore
├── .Rprofile
├── _workflowr.yml
├── analysis/
│ ├── about.Rmd
│ ├── index.Rmd
│ ├── license.Rmd
│ └── _site.yml
├── code/
│ ├── README.md
├── data/
│ └── README.md
├── data_raw/
│ └── README.md
├── docs/
├── myproject.Rproj
├── output/
│ └── README.md
└── README.md
```
This base structure is modified to include specific analysis data.
```{r}
# store r objects
dir.create("data/01_exploratory")
dir.create("data/01_exploratory/rds")
dir.create("data/01_exploratory/tables")
dir.create("data/01_exploratory/figs")
```
```{r}
dir.create("data_raw/02_wetlab")
dir.create("data/02_wetlab")
dir.create("data/02_wetlab/rds")
dir.create("data/02_wetlab/tables")
dir.create("data/02_wetlab/figs")
```
```{r}
dir.create("data_raw/03_amplicon")
dir.create("data/03_amplicon")
dir.create("data/03_amplicon/rds")
dir.create("data/03_amplicon/tables")
dir.create("data/03_amplicon/figs")
```
```{r}
dir.create("data_raw/04_metatrans")
dir.create("data/04_metatrans")
dir.create("data/04_metatrans/rds")
dir.create("data/04_metatrans/tables")
dir.create("data/04_metatrans/figs")
```
```{r}
dir.create("data_raw/05_gmm")
dir.create("data/05_gmm")
dir.create("data/05_gmm/rds")
dir.create("data/05_gmm/tables")
dir.create("data/05_gmm/figs")
```