diff --git a/workflow/rules/download.smk b/workflow/rules/download.smk index f87166e6..b849deb0 100644 --- a/workflow/rules/download.smk +++ b/workflow/rules/download.smk @@ -65,9 +65,10 @@ rule extract_gtdb: resources: time_min=60 * int(config.get("runtime", {"long": 10})["long"]), log: - "logs/download/gtdbtk_untar.log", + stdout="logs/download/gtdbtk_untar.log", + stderr="logs/download/gtdbtk_untar.err", shell: - '( cat {input} | tar -xzvf - -C "{GTDBTK_DATA_PATH}" --strip 1 ) 2> {log} ' + '( cat {input} | tar -xzvf - -C "{GTDBTK_DATA_PATH}" --strip 1 ) 2> {log.stderr} > {log.stdout} ' ### end GTDBTk