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.gitmodules
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[submodule "mcutils"]
path = mcutils
url = https://github.com/mchaisso/mcutils.git
ignore = dirty
[submodule "local_assembly/pbgreedyphase"]
path = local_assembly/pbgreedyphase
url = https://github.com/mchaisso/pbgreedyphase.git
ignore = dirty
[submodule "pbsamstream"]
path = pbsamstream
url = https://github.com/mchaisso/pbsamstream.git
ignore = dirty
[submodule "samtools"]
path = samtools
url = https://github.com/samtools/samtools.git
ignore = dirty
[submodule "htslib"]
path = htslib
url = https://github.com/samtools/htslib.git
ignore = dirty
[submodule "blasr"]
path = blasr
url = https://github.com/mchaisso/blasr.git
ignore = dirty
[submodule "hgsvg"]
path = hgsvg
url = https://github.com/EichlerLab/hgsvg.git
ignore = dirty
[submodule "vt"]
path = vt
url = https://github.com/atks/vt.git
ignore = dirty
[submodule "local_assembly/blasr"]
path = local_assembly/blasr
url = https://github.com/mchaisso/blasr.git
ignore = dirty
[submodule "hdf5"]
path = hdf5
url = https://github.com/mortenpi/hdf5.git
[submodule "pbcommand"]
path = pbcommand
url = https://github.com/PacificBiosciences/pbcommand
[submodule "ConsensusCore"]
path = ConsensusCore
url = https://github.com/PacificBiosciences/ConsensusCore
[submodule "unanimity"]
path = unanimity
url = https://github.com/PacificBiosciences/unanimity.git
[submodule "GenomicConsensus"]
path = GenomicConsensus
url = https://github.com/PacificBiosciences/GenomicConsensus
[submodule "h5py"]
path = h5py
url = https://github.com/h5py/h5py.git