From fd47d28a53bb38508e6812612cbe457eb86bed91 Mon Sep 17 00:00:00 2001 From: aditigopalan <63365451+aditigopalan@users.noreply.github.com> Date: Fri, 1 Dec 2023 14:06:36 -0500 Subject: [PATCH] Late 2023 Grant Curation Updates Add the following new grant numbers as valid values for all 'grant number' related attributes: CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511 Add the following as a valid value for the attribute Grant Institution Name: Washington University in St. Louis Add the following as a valid value for the attribute Grant Institution Alias: WUSTL Grant Start Date - this should be REQUIRED and validated as a date, ideally in YYYY-MM-DD format (see schematic validation rule here: https://sagebionetworks.jira.com/wiki/spaces/SCHEM/pages/2645262364/Data+Model+Validation+Rules#date) . A description for this attribute can be, "The start date of the grant" NIH RePORTER Link - this should be REQUIRED and validated as a URL (see schematic validation rule here: https://sagebionetworks.jira.com/wiki/spaces/SCHEM/pages/2645262364/Data+Model+Validation+Rules#URL-Validation-Type). A description for this attribute can be, "Link to the search results for this grant number on the NIH Reporter website" Duration of Funding - this should be OPTIONAL. A description for this attribute can be, "Duration of the funding period, in years" Duration of Data Embargo - this should be OPTIONAL. A description for this attribute can be, "Duration that the data are embargoed, in months" --- all_valid_values.csv | 13 + mc2.model.csv | 32 +- mc2.model.jsonld | 457 +++++++++++++++++++++ modules/dataset/annotationProperty.csv | 2 +- modules/education/annotationProperty.csv | 2 +- modules/grant/annotationProperty.csv | 8 +- modules/grant/grant_number.csv | 3 +- modules/person/annotationProperty.csv | 2 +- modules/project/annotationProperty.csv | 2 +- modules/publication/annotationProperty.csv | 2 +- modules/tool/annotationProperty.csv | 2 +- 11 files changed, 502 insertions(+), 23 deletions(-) diff --git a/all_valid_values.csv b/all_valid_values.csv index e0bdb3c..aa261ce 100644 --- a/all_valid_values.csv +++ b/all_valid_values.csv @@ -590,6 +590,17 @@ grant_number,CA274509 grant_number,CA275808 grant_number,CA279408 grant_number,CA279560 +grant_number,CA280984 +grant_number,CA280849 +grant_number,CA280829 +grant_number,CA284090 +grant_number,CA284086 +grant_number,CA274504 +grant_number,CA283114 +grant_number,CA274507 +grant_number,CA274506 +grant_number,CA274511 +grant_number,CA282451 assay,10-cell RNA Sequencing assay,16S Ribosomal Gene Sequencing Assay assay,3' RNA-seq @@ -1811,6 +1822,7 @@ institution_alias,UWM institution_alias,University of Illinois institution_alias,University of Texas MD Anderson Cancer Center institution_alias,Vanderbilt +institution_alias,WUSTL institution_alias,WCM institution_alias,Wake Forest institution_alias,Wistar @@ -1893,6 +1905,7 @@ institution_name,University of Virginia institution_name,University of Washington institution_name,University of Wisconsin-Madison institution_name,Vanderbilt University +institution_name,Washington University in St. Louis institution_name,Wake Forest institution_name,Weill Cornell Medicine institution_name,Wistar Institute diff --git a/mc2.model.csv b/mc2.model.csv index e75b492..290a759 100644 --- a/mc2.model.csv +++ b/mc2.model.csv @@ -38,7 +38,7 @@ Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values perm Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation",,FALSE,,,,,list like Dataset Grant,"Datasets associated with a grant, joined by uuids from the dataset and grant table.",,"Component. Dataset, Grant",FALSE,,,"Dataset, Grant",, Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, Dataset Pubmed Id, Dataset Grant Number, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset File Formats",FALSE,,,"Publication, Grant, Dataset",, -Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560",,TRUE,,,,,list like +Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,TRUE,,,,,list like DatasetView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique Educational Resource,Manifest for describing educational resources.,,"Component, EducationalResource_id, Resource Title, Resource Link, Resource Topic, Resource Activity Type, Resource Primary Format, Resource Intended Use, Resource Primary Audience, Resource Educational Level, Resource Description, Resource Origin Institution, Resource Language, Resource Contributors, Resource Grant Number, Resource Secondary Topic, Resource License, Resource Use Requirements, Resource Alias, Resource Internal Identifier, Resource Media Accessibility, Resource Access Hazard, Resource Dataset Alias, Resource Tool Link",FALSE,,,"Dataset, Tool, Grant",, @@ -54,7 +54,7 @@ Resource Description,Abstract or summary of the item.,,,TRUE,,,,OER,str Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,TRUE,,,,OER,list like Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,TRUE,,,,OER,list like :: regex fullmatch [a-z]{2} Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,TRUE,,,,OER,list like -Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560",,TRUE,,,,MC2/grant,list like +Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,MC2/grant,list like Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,FALSE,,,,OER,list like Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,OER,list like Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,str @@ -127,8 +127,8 @@ Grant Abstract,Abstract for the grant,,,TRUE,,,,, Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,TRUE,,,,, Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name",FALSE,,,"Theme, Institution, Consortium, Grant",, Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,TRUE,,,,,list like -Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like -Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like +Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like +Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like Grant Investigator,Investigator(s) associated witht the grant. 1...*,,,TRUE,,,,,list like Grant Consortium Name,Consortium(s) associated with the grant. 1...1,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, GrantView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique @@ -194,6 +194,10 @@ Oligo Barcode Upper Strand,Oligo Barcode - Upper Strand,,,FALSE,,,,HTAN, Oligo Barcode Lower Strand,Oligo Barcode - Lower Strand,,,FALSE,,,,HTAN, Dilution,Dilution (eg 1:1000),,,FALSE,,,,HTAN, Concentration,Concentration (eg 10ug/mL),,,FALSE,,,,HTAN, +Grant Start Date,The start date of the grant YYYY-MM-DD format,,,TRUE,,,,,date +NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,TRUE,,,,,url +Duration of Funding,"Duration of the funding period, in years",,,FALSE,,,,, +Duration of Data Embargo,"Duration that the data are embargoed, in months",,,FALSE,,,,, Institution,Institutions participating in consortia activities,,"Component, Institution Name, Institution Full Name, Institution Alias, Institution Location State, Institution Location City, Rorid",FALSE,,,,, Institution Name,"Machine readable name of the institution. (e.g. ArizonaStatUniversity, BostonUniversity, etc.)",,,TRUE,,,,, Institution Full Name,"Human readable, full name of the institution. (e.g. Arizona State University, Boston University, etc.)",,,TRUE,,,,, @@ -216,7 +220,7 @@ Consent For Portal Display,Consent from individual to display Person information Portal Display,Display content in CCKP,"FALSE, TRUE",,TRUE,,,,, Person Consortium,"Consortiums associated with a person, joined by uuids from the person and consortium table.",,"Component, Person, Consortium",FALSE,,,"Person, Consortium",, Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, Person Grant Number, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",FALSE,,,"Publication, Dataset, Tool, Consortium, Grant, Person, Educational Resource",, -Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560",,TRUE,,,,,list like +Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,,list like Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like @@ -229,7 +233,7 @@ Project Type,Type of project,"Core, Project",,TRUE,,,,, Project Description,Description of the project,,,TRUE,,,,, Project Investigator,Investigator(s) associated witht the project. 1...*,,,TRUE,,,,,list like Project View,The denormalized manifest for project submission.,,"Component, ProjectView_id, Project Name, Project Type, Project Description, Project Investigator, Project Consortium Name, Project Grant Number",FALSE,,,"Project, Grant",, -Project Grant Number,Grant number(s) associated with the project 1...*,"Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560",,TRUE,,,,,list like +Project Grant Number,Grant number(s) associated with the project 1...*,"Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like Project Consorium Name, Consortium(s) associated with the project. 1...1,,,TRUE,,,,, Project Consortium Name,,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, ProjectView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique @@ -249,17 +253,17 @@ Publication Tissue,"Tissue type(s) associated with the publication. Multiple val Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, Publication Grant,"Publications associated with a grant, joined by uuids from the publication and grant table. ",,"Component, Publication, Grant",FALSE,,,"Publication, Grant",, Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Publication Grant Number, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility, Publication Dataset Alias",FALSE,,,"Dataset, Tool, Grant, Publication",, -Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560",,TRUE,,,,,list like +Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Publication View DCA,The denormalized manifest for publication submission with component_id field for DCA upsert function.,,"Component, PublicationViewDCA_id, Publication Grant Number, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility, Publication Dataset Alias",FALSE,,,"Dataset, Tool, Grant, Publication",, PublicationViewDCA_id,Unique identifier that allows schematic to update and insert entries.,,,TRUE,,,,,unique PublicationView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique -Component,"Category of metadata (e.g. Tools, Publications, etc.); provide the same one for all items/rows.",,,TRUE,,,,, -Theme,Themes associated with resources derived from consortia activities,,"Component, Theme Name, Theme Display Name, Theme Description",FALSE,,,,, -Theme Name,"Machine readable name of the research theme. (e.g. compuational_resource, drug_resistance_sensitivity).",,,TRUE,,,,, -Theme Display Name,"Human readable display name of the research theme. (e.g. Computational Resource, Drug Resistance/Sensitivity)",,,TRUE,,,,, -Theme Description,Description of the research theme.,,,TRUE,,,,, -Theme Grant,"Themes associated with Grants, joined by uuids from the theme and grant table.",,"Component, Theme, Grant",FALSE,,,"Theme, Grant",, +Component,"Category of metadata (e.g. Tools, Publications, etc.); provide the same one for all items/rows.",,,TRUE,,,,, +Theme,Themes associated with resources derived from consortia activities,,"Component, Theme Name, Theme Display Name, Theme Description",FALSE,,,,, +Theme Name,"Machine readable name of the research theme. (e.g. compuational_resource, drug_resistance_sensitivity).",,,TRUE,,,,, +Theme Display Name,"Human readable display name of the research theme. (e.g. Computational Resource, Drug Resistance/Sensitivity)",,,TRUE,,,,, +Theme Description,Description of the research theme.,,,TRUE,,,,, +Theme Grant,"Themes associated with Grants, joined by uuids from the theme and grant table.",,"Component, Theme, Grant",FALSE,,,"Theme, Grant",, Tool,"Application software derived from consortia activity with well-defined processing functions (inputs, outputs, and operations).",,"Component, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note",FALSE,,,,, Tool Name,Canonical tool name provided by the tool developer or service provider.,,,TRUE,,,,biotoolsschema,unique Tool Description,Textual description of the tool.,,,TRUE,,,,biotoolsschema, @@ -291,6 +295,6 @@ Tool Link Type,"The type of data, information or system that is obtained when th Tool Link Note,Comment about the link.,,,FALSE,,,,biotoolsschema, Tool Grant,"Tools associated with a grant, joined by uuids from the tool table and grant table.",,"Component, Tool, Grant",FALSE,,,"Tool, Grant",, Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, Tool Pubmed Id, Tool Grant Number, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note",FALSE,,,"Publication, Dataset, Grant, Tool",, -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560",,TRUE,,,,,list like +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,,,FALSE,,,,,int ToolView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique diff --git a/mc2.model.jsonld b/mc2.model.jsonld index e8ecfbc..47a1c4a 100644 --- a/mc2.model.jsonld +++ b/mc2.model.jsonld @@ -7512,6 +7512,39 @@ }, { "@id": "bts:CA279560" + }, + { + "@id": "bts:CA280984" + }, + { + "@id": "bts:CA280849" + }, + { + "@id": "bts:CA280829" + }, + { + "@id": "bts:CA284090" + }, + { + "@id": "bts:CA284086" + }, + { + "@id": "bts:CA274504" + }, + { + "@id": "bts:CA283114" + }, + { + "@id": "bts:CA274507" + }, + { + "@id": "bts:CA274506" + }, + { + "@id": "bts:CA274511" + }, + { + "@id": "bts:CA282451" } ], "sms:displayName": "Dataset Grant Number", @@ -9140,6 +9173,39 @@ }, { "@id": "bts:CA279560" + }, + { + "@id": "bts:CA280984" + }, + { + "@id": "bts:CA280849" + }, + { + "@id": "bts:CA280829" + }, + { + "@id": "bts:CA284090" + }, + { + "@id": "bts:CA284086" + }, + { + "@id": "bts:CA274504" + }, + { + "@id": "bts:CA283114" + }, + { + "@id": "bts:CA274507" + }, + { + "@id": "bts:CA274506" + }, + { + "@id": "bts:CA274511" + }, + { + "@id": "bts:CA282451" } ], "sms:displayName": "Resource Grant Number", @@ -12559,6 +12625,9 @@ { "@id": "bts:VanderbiltUniversity" }, + { + "@id": "bts:WashingtonUniversityinSt.Louis" + }, { "@id": "bts:WakeForest" }, @@ -12826,6 +12895,9 @@ { "@id": "bts:Vanderbilt" }, + { + "@id": "bts:WUSTL" + }, { "@id": "bts:WCM" }, @@ -12940,6 +13012,10 @@ "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "ImagingLevel2", + "@id": "bts:GrantStartDate", + "@type": "rdfs:Class", + "rdfs:comment": "The start date of the grant YYYY-MM-DD format", + "rdfs:label": "GrantStartDate", "rdfs:subClassOf": [ { "@id": "schema:Thing" @@ -13850,6 +13926,17 @@ "@type": "rdfs:Class", "rdfs:comment": "This must match the corresponding field in the OME-XML / TIFF header. (eg 'Channel:0:1')", "rdfs:label": "ChannelID", + "sms:displayName": "Grant Start Date", + "sms:required": "sms:true", + "sms:validationRules": [ + "date" + ] + }, + { + "@id": "bts:NIHRePORTERLink", + "@type": "rdfs:Class", + "rdfs:comment": "Link to the search results for this grant number on the NIH Reporter website", + "rdfs:label": "NIHRePORTERLink", "rdfs:subClassOf": [ { "@id": "schema:Thing" @@ -13867,6 +13954,17 @@ "@type": "rdfs:Class", "rdfs:comment": "This must match the corresponding field in the OME-XML / TIFF header. (eg 'Blue' or 'CD45' or 'E-cadherin')", "rdfs:label": "ChannelName", + "sms:displayName": "NIH RePORTER Link", + "sms:required": "sms:true", + "sms:validationRules": [ + "url" + ] + }, + { + "@id": "bts:DurationofFunding", + "@type": "rdfs:Class", + "rdfs:comment": "Duration of the funding period, in years", + "rdfs:label": "DurationofFunding", "rdfs:subClassOf": [ { "@id": "schema:Thing" @@ -13901,6 +13999,7 @@ } ], "sms:displayName": "Channel Passed QC", + "sms:displayName": "Duration of Funding", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -13909,6 +14008,10 @@ "@type": "rdfs:Class", "rdfs:comment": "The cycle # in which the co-listed reagent(s) was(were) used. Integer >= 1 (up to number of cycles)", "rdfs:label": "CycleNumber", + "@id": "bts:DurationofDataEmbargo", + "@type": "rdfs:Class", + "rdfs:comment": "Duration that the data are embargoed, in months", + "rdfs:label": "DurationofDataEmbargo", "rdfs:subClassOf": [ { "@id": "schema:Thing" @@ -14619,6 +14722,7 @@ "@id": "http://schema.biothings.io" }, "sms:displayName": "Concentration", + "sms:displayName": "Duration of Data Embargo", "sms:required": "sms:false", "sms:validationRules": [] }, @@ -15836,6 +15940,39 @@ }, { "@id": "bts:CA279560" + }, + { + "@id": "bts:CA280984" + }, + { + "@id": "bts:CA280849" + }, + { + "@id": "bts:CA280829" + }, + { + "@id": "bts:CA284090" + }, + { + "@id": "bts:CA284086" + }, + { + "@id": "bts:CA274504" + }, + { + "@id": "bts:CA283114" + }, + { + "@id": "bts:CA274507" + }, + { + "@id": "bts:CA274506" + }, + { + "@id": "bts:CA274511" + }, + { + "@id": "bts:CA282451" } ], "sms:displayName": "Person Grant Number", @@ -16570,6 +16707,39 @@ }, { "@id": "bts:CA279560" + }, + { + "@id": "bts:CA280984" + }, + { + "@id": "bts:CA280849" + }, + { + "@id": "bts:CA280829" + }, + { + "@id": "bts:CA284090" + }, + { + "@id": "bts:CA284086" + }, + { + "@id": "bts:CA274504" + }, + { + "@id": "bts:CA283114" + }, + { + "@id": "bts:CA274507" + }, + { + "@id": "bts:CA274506" + }, + { + "@id": "bts:CA274511" + }, + { + "@id": "bts:CA282451" } ], "sms:displayName": "Project Grant Number", @@ -19494,6 +19664,39 @@ }, { "@id": "bts:CA279560" + }, + { + "@id": "bts:CA280984" + }, + { + "@id": "bts:CA280849" + }, + { + "@id": "bts:CA280829" + }, + { + "@id": "bts:CA284090" + }, + { + "@id": "bts:CA284086" + }, + { + "@id": "bts:CA274504" + }, + { + "@id": "bts:CA283114" + }, + { + "@id": "bts:CA274507" + }, + { + "@id": "bts:CA274506" + }, + { + "@id": "bts:CA274511" + }, + { + "@id": "bts:CA282451" } ], "sms:displayName": "Publication Grant Number", @@ -24686,6 +24889,39 @@ }, { "@id": "bts:CA279560" + }, + { + "@id": "bts:CA280984" + }, + { + "@id": "bts:CA280849" + }, + { + "@id": "bts:CA280829" + }, + { + "@id": "bts:CA284090" + }, + { + "@id": "bts:CA284086" + }, + { + "@id": "bts:CA274504" + }, + { + "@id": "bts:CA283114" + }, + { + "@id": "bts:CA274507" + }, + { + "@id": "bts:CA274506" + }, + { + "@id": "bts:CA274511" + }, + { + "@id": "bts:CA282451" } ], "sms:displayName": "Tool Grant Number", @@ -40865,6 +41101,193 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:CA280984", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA280984", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA280984", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA280849", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA280849", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA280849", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA280829", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA280829", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA280829", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA284090", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA284090", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA284090", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA284086", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA284086", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA284086", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA274504", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA274504", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA274504", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA283114", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA283114", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA283114", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA274507", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA274507", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA274507", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA274506", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA274506", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA274506", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA274511", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA274511", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA274511", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:CA282451", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "CA282451", + "rdfs:subClassOf": [ + { + "@id": "bts:DatasetGrantNumber" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "CA282451", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:ComputationalModelDevelopment", "@type": "rdfs:Class", @@ -54448,6 +54871,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:WashingtonUniversityinSt.Louis", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "WashingtonUniversityinSt.Louis", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionName" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Washington University in St. Louis", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:WakeForest", "@type": "rdfs:Class", @@ -55706,6 +56146,23 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:WUSTL", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "WUSTL", + "rdfs:subClassOf": [ + { + "@id": "bts:GrantInstitutionAlias" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "WUSTL", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:WCM", "@type": "rdfs:Class", diff --git a/modules/dataset/annotationProperty.csv b/modules/dataset/annotationProperty.csv index 0c5ec25..90e752e 100644 --- a/modules/dataset/annotationProperty.csv +++ b/modules/dataset/annotationProperty.csv @@ -12,6 +12,6 @@ Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values perm Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation",,FALSE,,,,,list like Dataset Grant,"Datasets associated with a grant, joined by uuids from the dataset and grant table.",,"Component. Dataset, Grant",FALSE,,,"Dataset, Grant",, Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, Dataset Pubmed Id, Dataset Grant Number, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset File Formats",FALSE,,,"Publication, Grant, Dataset",, -Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560",,TRUE,,,,,list like +Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,TRUE,,,,,list like DatasetView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique diff --git a/modules/education/annotationProperty.csv b/modules/education/annotationProperty.csv index 9a48926..c1a846e 100644 --- a/modules/education/annotationProperty.csv +++ b/modules/education/annotationProperty.csv @@ -12,7 +12,7 @@ Resource Description,Abstract or summary of the item.,,,TRUE,,,,OER,str Resource Origin Institution,Institution(s) of origin for this item. Multiple values should be provided as a comma separated list.,,,TRUE,,,,OER,list like Resource Language,Language of the item (not of the metadata). Multiple values should be provided as a comma separated list.,"aa, ab, ae, af, ak, am, an, ar, as, av, ay, az, ba, be, bg, bh, bi, bm, bn, bo, br, bs, ca, ca, ce, ch, co, cr, cs, cu, cv, cy, da, de, dv, dv, dz, ee, el, en, eo, es, et, eu, fa, ff, fi, fj, fo, fr, fy, ga, gd, gl, gn, gu, gv, ha, he, hi, ho, hr, ht, hu, hy, hz, ia, id, ie, ig, ii, ik, io, is, it, iu, ja, jv, ka, kg, ki, kj, kk, kl, km, kn, ko, kr, ks, ku, kv, kw, ky, la, lb, lg, li, ln, lo, lt, lu, lv, mg, mh, mi, mk, ml, mn, mr, ms, mt, my, na, nb, nd, ne, ng, nl, nn, no, nr, nv, ny, oc, oj, om, or, os, pa, pi, pl, ps, pt, qu, rm, rn, ro, ru, rw, sa, sc, sd, se, sg, si, sk, sl, sm, sn, so, sq, sr, ss, st, su, sv, sw, ta, te, tg, th, ti, tk, tl, tn, to, tr, ts, tt, tw, ty, ug, uk, ur, uz, ve, vi, vo, wa, wo, xh, yi, yo, za, zh, zu",,TRUE,,,,OER,list like :: regex fullmatch [a-z]{2} Resource Contributors,The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.,,,TRUE,,,,OER,list like -Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560",,TRUE,,,,MC2/grant,list like +Resource Grant Number,"The grant number(s) associated with the contributor(s) of the item. If no grant number listed is applicable, please select 'Affiliated/Non-Grant Associated'. Multiple values should be provided as a comma separated list.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,MC2/grant,list like Resource Secondary Topic,"Additional topics or keywords to describe the content of the item, in addition to the primary topic. Multiple values should be provided as a comma-separated list.",,,FALSE,,,,OER,list like Resource License,"The name of the license applied to the item by the contributor(s), if applicable. Multiple values should be provided as a comma separated list.","AAL, ADSL, AFL-1.1, AFL-1.2, AFL-2.0, AFL-2.1, AFL-3.0, AGPL-1.0, AGPL-3.0, AMDPLPA, AML, AMPAS, ANTLR-PD, APAFML, APL-1.0, APSL-1.0, APSL-1.1, APSL-1.2, APSL-2.0, Abstyles, Adobe-2006, Adobe-Glyph, Afmparse, Aladdin, Apache-1.0, Apache-1.1, Apache-2.0, Artistic-1.0, Artistic-1.0-Perl, Artistic-1.0-cl8, Artistic-2.0, BSD-2-Clause, BSD-2-Clause-FreeBSD, BSD-2-Clause-NetBSD, BSD-3-Clause, BSD-3-Clause-Attribution, BSD-3-Clause-Clear, BSD-3-Clause-LBNL, BSD-3-Clause-No-Nuclear-License, BSD-3-Clause-No-Nuclear-License-2014, BSD-3-Clause-No-Nuclear-Warranty, BSD-4-Clause, BSD-4-Clause-UC, BSD-Protection, BSD-Source-Code, BSD-style, BSL-1.0, Bahyph, Barr, Beerware, BitTorrent-1.0, BitTorrent-1.1, Borceux, CATOSL-1.1, CC-BY-1.0, CC-BY-2.0, CC-BY-2.5, CC-BY-3.0, CC-BY-4.0, CC-BY-NC-1.0, CC-BY-NC-2.0, CC-BY-NC-2.5, CC-BY-NC-3.0, CC-BY-NC-4.0, CC-BY-NC-ND-1.0, CC-BY-NC-ND-2.0, CC-BY-NC-ND-2.5, CC-BY-NC-ND-3.0, CC-BY-NC-ND-4.0, CC-BY-NC-SA-1.0, CC-BY-NC-SA-2.0, CC-BY-NC-SA-2.5, CC-BY-NC-SA-3.0, CC-BY-NC-SA-4.0, CC-BY-ND-1.0, CC-BY-ND-2.0, CC-BY-ND-2.5, CC-BY-ND-3.0, CC-BY-ND-4.0, CC-BY-SA-1.0, CC-BY-SA-2.0, CC-BY-SA-2.5, CC-BY-SA-3.0, CC-BY-SA-4.0, CC0-1.0, CDDL-1.0, CDDL-1.1, CECILL-1.0, CECILL-1.1, CECILL-2.0, CECILL-2.1, CECILL-B, CECILL-C, CNRI-Jython, CNRI-Python, CNRI-Python-GPL-Compatible, CPAL-1.0, CPL-1.0, CPOL-1.02, CUA-OPL-1.0, Caldera, ClArtistic, Condor-1.1, Crossword, CrystalStacker, Cube, D-FSL-1.0, DOC, DSDP, Dotseqn, ECL-1.0, ECL-2.0, EFL-1.0, EFL-2.0, EPL-1.0, EUDatagrid, EUPL-1.0, EUPL-1.1, Entessa, ErlPL-1.1, Eurosym, FSFAP, FSFUL, FSFULLR, FTL, Fair, Frameworx-1.0, FreeImage, Freeware, GFDL-1.1, GFDL-1.2, GFDL-1.3, GL2PS, GPL-1.0, GPL-2.0, GPL-3.0, Giftware, Glide, Glulxe, HPND, HaskellReport, IBM-pibs, ICU, IJG, IPA, IPL-1.0, ISC, ImageMagick, Imlib2, Info-ZIP, Intel, Intel-ACPI, Interbase-1.0, JSON, JasPer-2.0, LAL-1.2, LAL-1.3, LGPL-2.0, LGPL-2.1, LGPL-3.0, LGPLLR, LPL-1.0, LPL-1.02, LPPL-1.0, LPPL-1.1, LPPL-1.2, LPPL-1.3a, LPPL-1.3c, Latex2e, Leptonica, LiLiQ-P-1.1, LiLiQ-R-1.1, LiLiQ-Rplus-1.1, Libpng, MIT, MIT-CMU, MIT-advertising, MIT-enna, MIT-feh, MITNFA, MPL-1.0, MPL-1.1, MPL-2.0, MPL-2.0-no-copyleft-exception, MS-PL, MS-RL, MTLL, MakeIndex, MirOS, Motosoto, Multics, Mup, NASA-1.3, NBPL-1.0, NCSA, NGPL, NLOD-1.0, NLPL, NOSL, NPL-1.0, NPL-1.1, NPOSL-3.0, NRL, NTP, Naumen, NetCDF, Newsletr, Nokia, Not licensed, Noweb, Nunit, OCCT-PL, OCLC-2.0, ODbL-1.0, OFL-1.0, OFL-1.1, OGTSL, OLDAP-1.1, OLDAP-1.2, OLDAP-1.3, OLDAP-1.4, OLDAP-2.0, OLDAP-2.0.1, OLDAP-2.1, OLDAP-2.2, OLDAP-2.2.1, OLDAP-2.2.2, OLDAP-2.3, OLDAP-2.4, OLDAP-2.5, OLDAP-2.6, OLDAP-2.7, OLDAP-2.8, OML, OPL-1.0, OSET-PL-2.1, OSL-1.0, OSL-1.1, OSL-2.0, OSL-2.1, OSL-3.0, OpenSSL, Other, PDDL-1.0, PHP-3.0, PHP-3.01, Plexus, PostgreSQL, Proprietary, Python-2.0, QPL-1.0, Qhull, RHeCos-1.1, RPL-1.1, RPL-1.5, RPSL-1.0, RSA-MD, RSCPL, Rdisc, Ruby, SAX-PD, SCEA, SGI-B-1.0, SGI-B-1.1, SGI-B-2.0, SISSL, SISSL-1.2, SMLNJ, SMPPL, SNIA, SPL-1.0, SWL, Saxpath, Sendmail, SimPL-2.0, Sleepycat, Spencer-86, Spencer-94, Spencer-99, SugarCRM-1.1.3, TCL, TMate, TORQUE-1.1, TOSL, UPL-1.0, Unicode-TOU, Unlicense, VOSTROM, VSL-1.0, Vim, W3C, W3C-19980720, WTFPL, Watcom-1.0, Wsuipa, X11, XFree86-1.1, XSkat, Xerox, Xnet, YPL-1.0, YPL-1.1, ZPL-1.1, ZPL-2.0, ZPL-2.1, Zed, Zend-2.0, Zimbra-1.3, Zimbra-1.4, Zlib, bzip2-1.0.5, bzip2-1.0.6, curl, diffmark, dvipdfm, eGenix, gSOAP-1.3b, gnuplot, iMatix, libtiff, mpich2, psfrag, psutils, xinetd, xpp, zlib-acknowledgement",,FALSE,,,,OER,list like Resource Use Requirements,"A list of materials, hardware, software, computing power, and network requirements that the end user would need to satisfy before using the resource, if applicable. Multiple values should be provided as a comma separated list.",,,FALSE,,,,OER,str diff --git a/modules/grant/annotationProperty.csv b/modules/grant/annotationProperty.csv index bcead6c..8708faa 100644 --- a/modules/grant/annotationProperty.csv +++ b/modules/grant/annotationProperty.csv @@ -6,8 +6,12 @@ Grant Abstract,Abstract for the grant,,,TRUE,,,,, Grant Type,Type of grant,"R01, R21, R37, U01, U24, U54",,TRUE,,,,, Grant View,The denormalized manifest for grant submission.,,"Component, GrantView_id, Grant Name, Grant Number, Grant Abstract, Grant Type, Grant Theme Name, Grant Institution Name, Grant Institution Alias, Grant Investigator, Grant Consortium Name",FALSE,,,"Theme, Institution, Consortium, Grant",, Grant Theme Name,Theme(s) associated with the grant. 1...*,"Computational Model Development, Computational Resource, Drug Resistance/Sensitivity, Epigenetics, Evolution, Experimental Model Development, Heterogeneity, Immunotherapy, Mechano-genetics, Mechano-resistance, Metabolism, Metastasis, Method/Assay Development, Microenvironment, Oncogenic Stress, Platform Development, Tumor Progression, Tumor-Immune",,TRUE,,,,,list like -Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like -Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like +Grant Institution Name,The full name of the institution(s) associated with the grant. (e.g. Harvard University). 1...*,"Arizona State University, Auburn University, Barrow Neurological Institute, Baylor College Of Medicine, Beth Israel Deaconess Hospital, Boston Medical Center, Boston University, Brigham and Womens Hospital, California Institute of Technology, Childrens Hospital of Philadelphia, City Of Hope, Cleveland Clinic, Cold Spring Harbor Laboratory, Columbia University, Cornell University, Dana-Farber Cancer Institute, Dartmouth College, Duke University, Emory University, Georgia Institute of Technology, Harvard Medical School, Harvard University, Hebrew University of Jerusalem, Houston Methodist, Indiana University, Indiana University - Purdue University Indianapolis, Institute for Systems Biology, Jackson Laboratory, Johns Hopkins University, Lurie Children's Hospital, Massachusetts General Hospital, Massachusetts Institute of Technology, Mayo Clinic, Memorial Sloan Kettering Cancer Center, Moffitt Cancer Center, New York University, Northwestern University, Oregon Health & Science University, Pacific Northwest National Laboratory, Rockefeller University, Sage Bionetworks, Salk Institute for Biological Studies, St. Jude Children's Research Hospital, Stanford University, Stony Brook University, The University of Texas Health Science Center at San Antonio, University of Alabama at Birmingham, University of Arizona, University of California; Berkeley, University of California; Irvine, University of California; Los Angeles, University of California; San Diego, University of California; San Francisco, University of Chicago, University of Chicago Medical Center, University of Colorado Denver, University of Delaware, University of Florida, University of Illinois, University of Illinois at Chicago, University of Massachusetts Medical School, University of Miami, University of Michigan, University of Nevada Reno, University of Minnesota, University of New South Wales, University of North Carolina at Chapel Hill, University of Pennsylvania, University of Pittsburgh, University of Southern California, University of Texas MD Anderson Cancer Center, University of Texas Southwestern Medical Center, University of Texas at Austin, University of Utah, University of Virginia, University of Washington, University of Wisconsin-Madison, Vanderbilt University, Washington University in St. Louis, Wake Forest, Weill Cornell Medicine, Wistar Institute, Yale University",,TRUE,,,,,list like +Grant Institution Alias,The alias of the institution(s) associated with the grant (e.g. UCSD). 1...*,"ASU, AU, BCM, BIDMC, BMC, BU, BWH, Barrow, CHOP, COH, CSHL, Caltech, Cleveland Clinic, Columbia, Cornell, DFCI, Dartmouth, Duke, Emory, GTech, HMS, HUJI, Harvard, Houston Methodist, ISB, IU, IUPUI, JHU, Jackson Laboratory, Lurie Children's Hospital, MGH, MIT, MSKCC, Mayo, Moffitt, NU, NYU, OHSU, PNNL, Pitt, Rockefeller University, SBU, Sage, Salk, StJude, Stanford, U Miami, UA, UAB, UCBerkeley, UCD, UCI, UCLA, UCMC, UCSD, UCSF, UChicago, UD, UFL, UIC, UMMS, UMichigan, UMinn, UNC, UNR, UNSW, UPenn, USC, UT Austin, UT Southwestern, UTHSCSA, UUtah, UVA, UW, UWM, University of Illinois, University of Texas MD Anderson Cancer Center, Vanderbilt, WUSTL, WCM, Wake Forest, Wistar, Yale",,TRUE,,,,,list like Grant Investigator,Investigator(s) associated witht the grant. 1...*,,,TRUE,,,,,list like Grant Consortium Name,Consortium(s) associated with the grant. 1...1,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, GrantView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique +Grant Start Date,The start date of the grant YYYY-MM-DD format,,,TRUE,,,,,date +NIH RePORTER Link,Link to the search results for this grant number on the NIH Reporter website,,,TRUE,,,,,url +Duration of Funding,"Duration of the funding period, in years",,,FALSE,,,,, +Duration of Data Embargo,"Duration that the data are embargoed, in months",,,FALSE,,,,, diff --git a/modules/grant/grant_number.csv b/modules/grant/grant_number.csv index 37284c6..259f398 100644 --- a/modules/grant/grant_number.csv +++ b/modules/grant/grant_number.csv @@ -141,4 +141,5 @@ CA274504,,,,FALSE,,Grant Number,,,,,,,, CA283114,,,,FALSE,,Grant Number,,,,,,,, CA274507,,,,FALSE,,Grant Number,,,,,,,, CA274506,,,,FALSE,,Grant Number,,,,,,,, -CA274511,,,,FALSE,,Grant Number,,,,,,,, \ No newline at end of file +CA274511,,,,FALSE,,Grant Number,,,,,,,, +CA282451,,,,FALSE,,Grant Number,,,,,,,, \ No newline at end of file diff --git a/modules/person/annotationProperty.csv b/modules/person/annotationProperty.csv index 18354d4..d54691b 100644 --- a/modules/person/annotationProperty.csv +++ b/modules/person/annotationProperty.csv @@ -13,7 +13,7 @@ Consent For Portal Display,Consent from individual to display Person information Portal Display,Display content in CCKP,"FALSE, TRUE",,TRUE,,,,, Person Consortium,"Consortiums associated with a person, joined by uuids from the person and consortium table.",,"Component, Person, Consortium",FALSE,,,"Person, Consortium",, Person View,The denormalized manifest for person submission.,,"Component, PersonView_id, Person Grant Number, Person Consortium Name, Name, Alternative Names, Email, Url, Orcid Id, Synapse Profile Id, Last Known Institution, Working Group Participation, Chair Roles, Consent For Portal Display, Portal Display, Person Publications, Person Datasets, Person Tools, Person Educational Resources",FALSE,,,"Publication, Dataset, Tool, Consortium, Grant, Person, Educational Resource",, -Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560",,TRUE,,,,,list like +Person Grant Number,"Grant number(s) associated with the person. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like Person Consortium Name,"Consortium(s) associated with the person. Multiple values permitted, comma separated.","CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,,list like Person Publications,"A list of the pubmed Ids associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Person Datasets,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the person. Multiple values permitted, comma separated.",,,FALSE,,,,,list like diff --git a/modules/project/annotationProperty.csv b/modules/project/annotationProperty.csv index cab97e8..ed60236 100644 --- a/modules/project/annotationProperty.csv +++ b/modules/project/annotationProperty.csv @@ -5,7 +5,7 @@ Project Type,Type of project,"Core, Project",,TRUE,,,,, Project Description,Description of the project,,,TRUE,,,,, Project Investigator,Investigator(s) associated witht the project. 1...*,,,TRUE,,,,,list like Project View,The denormalized manifest for project submission.,,"Component, ProjectView_id, Project Name, Project Type, Project Description, Project Investigator, Project Consortium Name, Project Grant Number",FALSE,,,"Project, Grant",, -Project Grant Number,Grant number(s) associated with the project 1...*,"Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560",,TRUE,,,,,list like +Project Grant Number,Grant number(s) associated with the project 1...*,"Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like Project Consorium Name, Consortium(s) associated with the project. 1...1,,,TRUE,,,,, Project Consortium Name,,"CCBIR, CSBC, HTAN, ICBP, MetNet, NCI, NCI Clinical and Translational Exploratory/Developmental Studies, PDMC, PS-ON, Sage Bionetworks, TEC",,TRUE,,,,, ProjectView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique diff --git a/modules/publication/annotationProperty.csv b/modules/publication/annotationProperty.csv index 8ec3500..da47e28 100644 --- a/modules/publication/annotationProperty.csv +++ b/modules/publication/annotationProperty.csv @@ -15,7 +15,7 @@ Publication Tissue,"Tissue type(s) associated with the publication. Multiple val Publication Accessibility,Whether there are non-monetary restrictions on accessing an the publication.,"Open Access, Restricted Access",,TRUE,,,,, Publication Grant,"Publications associated with a grant, joined by uuids from the publication and grant table. ",,"Component, Publication, Grant",FALSE,,,"Publication, Grant",, Publication View,The denormalized manifest for publication submission.,,"Component, PublicationView_id, Publication Grant Number, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility, Publication Dataset Alias",FALSE,,,"Dataset, Tool, Grant, Publication",, -Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560",,TRUE,,,,,list like +Publication Grant Number,"Relevant grant number associated witht the publication's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like Publication Dataset Alias,"A list of the dataset aliases (An alias of the dataset must be unique. Can be the GEO identifier such as GSE12345, or a DOI. No Greek Letters) associated with the publication. Multiple values permitted, comma separated.",,,FALSE,,,,,list like Publication View DCA,The denormalized manifest for publication submission with component_id field for DCA upsert function.,,"Component, PublicationViewDCA_id, Publication Grant Number, Publication Doi, Publication Journal, Pubmed Id, Pubmed Url, Publication Title, Publication Year, Publication Keywords, Publication Authors, Publication Abstract, Publication Assay, Publication Tumor Type, Publication Tissue, Publication Accessibility, Publication Dataset Alias",FALSE,,,"Dataset, Tool, Grant, Publication",, PublicationViewDCA_id,Unique identifier that allows schematic to update and insert entries.,,,TRUE,,,,,unique diff --git a/modules/tool/annotationProperty.csv b/modules/tool/annotationProperty.csv index 4efb717..90ce8cd 100644 --- a/modules/tool/annotationProperty.csv +++ b/modules/tool/annotationProperty.csv @@ -30,6 +30,6 @@ Tool Link Type,"The type of data, information or system that is obtained when th Tool Link Note,Comment about the link.,,,FALSE,,,,biotoolsschema, Tool Grant,"Tools associated with a grant, joined by uuids from the tool table and grant table.",,"Component, Tool, Grant",FALSE,,,"Tool, Grant",, Tool View,The denormalized manifest for tool submission.,,"Component, ToolView_id, Tool Pubmed Id, Tool Grant Number, Tool Name, Tool Description, Tool Homepage, Tool Version, Tool Operation, Tool Input Data, Tool Output Data, Tool Input Format, Tool Output Format, Tool Function Note, Tool Cmd, Tool Type, Tool Topic, Tool Operating System, Tool Language, Tool License, Tool Cost, Tool Accessibility, Tool Download Url, Tool Download Type, Tool Download Note, Tool Download Version, Tool Documentation Url, Tool Documentation Type, Tool Documentation Note, Tool Link Url, Tool Link Type, Tool Link Note",FALSE,,,"Publication, Dataset, Grant, Tool",, -Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560",,TRUE,,,,,list like +Tool Grant Number,"Grant number associated with the tool's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808, CA279408, CA279560, CA280984, CA280849, CA280829, CA284090, CA284086, CA274504, CA283114, CA274507, CA274506, CA274511, CA282451",,TRUE,,,,,list like Tool Pubmed Id,The pubMed identifer associated with the development of the tool.,,,FALSE,,,,,int ToolView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique