conda-publish.yml

name: Build larch on linux and publish to Anaconda Cloud

on:
  workflow_dispatch:

jobs:
  conda-publish:
    runs-on: ubuntu-latest
    environment: conda-publish 

    steps:
      - name: Check out code
        uses: actions/checkout@v2
        with:
          submodules: true
      - name: Prepare build environment
        run: |
          sudo apt-get update
          sudo apt-get install build-essential zlib1g-dev python3-pip python3-pytest git git-lfs
      - name: Install conda
        run: |
          curl -L https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh > Miniconda3-latest-Linux-x86_64.sh
          bash Miniconda3-latest-Linux-x86_64.sh -b -p ~/miniconda
          ~/miniconda/bin/conda update -n base -c defaults conda
      - name: Create conda env
        run: |
          source ~/miniconda/etc/profile.d/conda.sh
          conda config --prepend channels conda-forge
          conda config --prepend channels bioconda
          conda config --show channels
          conda env create -f environment-dev.yml
      - name: Build conda package and upload to Anaconda Cloud
        env:
          ANACONDA_USER: ${{ vars.ANACONDA_USER }}
          ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }}
          ANACONDA_FLAGS: ${{ vars.ANACONDA_FLAGS }} 
          INCLUDE_LARCH_TEST: ${{ vars.INCLUDE_LARCH_TEST }}
          RUN_LARCH_TEST: ${{ vars.RUN_LARCH_TEST }}
          UPLOAD_TO_ANACONDA: ${{ vars.UPLOAD_TO_ANACONDA }}
        run: |
          source ~/miniconda/etc/profile.d/conda.sh
          conda activate larch-dev
          export LARCH_VERSION=$(cat ./VERSION)
          export INCLUDE_LARCH_TEST=${INCLUDE_LARCH_TEST}
          export RUN_LARCH_TEST=${RUN_LARCH_TEST}
          if [[ ${UPLOAD_TO_ANACONDA} == true ]]; then
            conda build . --user ${ANACONDA_USER} --token ${ANACONDA_TOKEN} ${ANACONDA_FLAGS}
          else
            conda build . 
          fi