This page contains a single notebook with all code used to produce the analysis in our manuscript: Jointly modeling deep mutational scans identifies shifted mutational effects among SARS-CoV-2 spike homologs. The purpose of this is two-fold: for code availability and reproducibility of our manuscript analysis, and as an example of how the multidms API might be used in your own analysis.
The source code for this page, key data files, as well as the relevant instructions to run the analysis yourself, can be found at https://github.com/matsengrp/SARS-CoV-2_spike_multidms
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spike-analysis