settings.yaml

numb_threads: 32
max_memory: 8
output_dir: '/path/output_directory'
reference:
  alias: 'med'
  mtf: 'MF407676'
  mtm: 'HM489874'
samples:
  sample_01:
    alias: 'MedF45'
    accession: 'SRR9872845'
  sample_02:
    alias: 'MedF49'
    accession: 'SRR9872849'
  sample_03:
    alias: 'MedF52'
    accession: 'SRR9872852'
  sample_04:
    alias: 'MedM31'
    accession: 'SRR9872831'
  sample_05:
    alias: 'MedM37'
    accession: 'SRR9872837'
  sample_06:
    alias: 'MedM40'
    accession: 'SRR9872840'
other_spp:
  specie_01:
    alias: 'rph'
    mtf: 'MT757748'
    mtm: 'MT757749'
  specie_02:
    alias: 'mtr'
    mtf: 'GU936625'
    mtm: 'HM462081'
  specie_03:
    alias: 'mca'
    mtf: 'JX486124'
    mtm: 'JX486123'
  specie_04:
    alias: 'mse'
    mtf: 'GU001953'
    mtm: 'GU001954'
  specie_05:
    alias: 'mga'
    mtf: 'AY497292'
    mtm: 'AY363687'
  specie_06:
    alias: 'cgi'
    mt: 'MZ497416'