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varSplitter terminate #1

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Bobo22331 opened this issue Jul 17, 2020 · 0 comments
Open

varSplitter terminate #1

Bobo22331 opened this issue Jul 17, 2020 · 0 comments

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@Bobo22331
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Hi,

When I use the varSplitter to split the merged sv table from the variants-raw directory, but it occurs the following error:

varSplitter sv.a1.a2.d10.merged.txt >sv.a1.a2.d10.merged.split.txt


terminate called after throwing an instance of 'std::out_of_range'
  what():  basic_string::substr
Aborted (core dumped)

And the sv.a1.a2.d10.merged.txt was merged with the bedtools:

bedtools merge -i sv.a1.a2.sort.txt -c 2,4,5,6,7,8,9,10 -o count,collapse,collapse,collapse,collapse,collapse,collapse,collapse -delim ";" >sv.a1.a2.d10.merged.txt

So, how to solve this error? Thank you in advance!

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