From 3b7c69dcf4cdfa36fcd1e48a24fbcb46583ac8ca Mon Sep 17 00:00:00 2001
From: Tony Johnson <tonyj@stanford.edu>
Date: Thu, 4 Nov 2021 10:38:05 -0700
Subject: [PATCH 1/2] Start work on LSSTTD-1575 (untested)

---
 examples/bias10-LSSTTD-1575.cfg | 20 ++++++++++++++++++++
 lib/acquire.py                  |  5 +++++
 lib/config.py                   |  4 ++++
 3 files changed, 29 insertions(+)
 create mode 100644 examples/bias10-LSSTTD-1575.cfg

diff --git a/examples/bias10-LSSTTD-1575.cfg b/examples/bias10-LSSTTD-1575.cfg
new file mode 100644
index 0000000..c6ec9fb
--- /dev/null
+++ b/examples/bias10-LSSTTD-1575.cfg
@@ -0,0 +1,20 @@
+# BOT EO configuration file
+
+# specify which acquisition sequences to run
+#
+[ACQUIRE]
+bias1
+bias2
+
+[CONFIG]
+IDLE_FLUSH=True
+
+# Bias
+#
+[BIAS1]
+acqtype=bias
+COUNT=4         # number of bias frames, for BIAS image & noise analysis
+
+[BIAS2]
+acqtype=bias
+COUNT=6         # number of bias frames, for BIAS image & noise analysis
diff --git a/lib/acquire.py b/lib/acquire.py
index 1993b6f..734f481 100755
--- a/lib/acquire.py
+++ b/lib/acquire.py
@@ -539,3 +539,8 @@ def do_scan(options):
     print "scan called %s" % options
     tc = ScanTestCoordinator(options)
     tc.take_images()
+
+def do_one_time_config(options):
+    idle_flush = options.get("IDLE_FLUSH")
+    if idle_flush:
+        fp.fp.sequencerConfig().change("idleFlushTimeout", 0 if idle_flush else -1)
diff --git a/lib/config.py b/lib/config.py
index 44f7790..0e155e8 100755
--- a/lib/config.py
+++ b/lib/config.py
@@ -36,6 +36,10 @@ def execute(config, command_line_options):
        time.sleep(30)	# wait a bit for getting settled
        command_line_options["symlink"] = "/".join([symlink,alabel])
 
+    one_time_config = config.options("CONFIG")
+    if one_time_config:
+       acquire.do_one_time_config(one_time_config)
+
     items = config.options("ACQUIRE")
     for item in items:
        options = Config(dict(config.items(item.upper())))

From c7afce56e54e01aa4a44185d23a8dbcf62a946ef Mon Sep 17 00:00:00 2001
From: CCS Operator Account <ccs@lsst-dc01.slac.stanford.edu>
Date: Fri, 5 Nov 2021 09:28:24 -0700
Subject: [PATCH 2/2] Bug fixes after testing

---
 lib/acquire.py |  5 +++--
 lib/config.py  | 14 ++++++++++++--
 2 files changed, 15 insertions(+), 4 deletions(-)

diff --git a/lib/acquire.py b/lib/acquire.py
index 88fb091..e90d299 100755
--- a/lib/acquire.py
+++ b/lib/acquire.py
@@ -556,6 +556,7 @@ def do_scan(options):
     tc.take_images()
 
 def do_one_time_config(options):
-    idle_flush = options.get("IDLE_FLUSH")
-    if idle_flush:
+    print "one_time_config called %s" % options
+    if "idle_flush" in options:
+        idle_flush = options.getBool("idle_flush")
         fp.fp.sequencerConfig().change("idleFlushTimeout", 0 if idle_flush else -1)
diff --git a/lib/config.py b/lib/config.py
index 0e155e8..3088335 100755
--- a/lib/config.py
+++ b/lib/config.py
@@ -36,9 +36,9 @@ def execute(config, command_line_options):
        time.sleep(30)	# wait a bit for getting settled
        command_line_options["symlink"] = "/".join([symlink,alabel])
 
-    one_time_config = config.options("CONFIG")
+    one_time_config = config.items("CONFIG")
     if one_time_config:
-       acquire.do_one_time_config(one_time_config)
+       acquire.do_one_time_config(Config(dict(one_time_config)))
 
     items = config.options("ACQUIRE")
     for item in items:
@@ -74,5 +74,15 @@ def getFloat(self, key, defaultValue=None):
           raise Exception('Missing config value %s' % key)
      return float(value)
 
+  def getBool(self, key, defaultValue=None):
+     value = self.get(key)
+     if not value:
+       if defaultValue != None:
+          return defaultValue
+       else:
+          raise Exception('Missing config value %s' % key)
+     return value.lower() in ['true', '1', 't', 'y', 'yes']
+
+
   def getList(self, key):
      return self.get(key).replace('\n','').split(',')