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antagonist-as-reactions.xml
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<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1">
<model id="sauro1" name="sauro1 translated by MOCCASIN" substanceUnits="substance" timeUnits="second" volumeUnits="volume" areaUnits="area" lengthUnits="metre" extentUnits="substance">
<listOfUnitDefinitions>
<unitDefinition id="volume">
<listOfUnits>
<unit kind="litre" exponent="1" scale="0" multiplier="1"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="substance">
<listOfUnits>
<unit kind="mole" exponent="1" scale="0" multiplier="1"/>
</listOfUnits>
</unitDefinition>
<unitDefinition id="area">
<listOfUnits>
<unit kind="metre" exponent="2" scale="0" multiplier="1"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment id="compartmentOne" spatialDimensions="3" size="1" units="volume" constant="true"/>
</listOfCompartments>
<listOfSpecies>
<species id="IFNb_mRNA" name="IFNb_mRNA" compartment="compartmentOne" initialConcentration="0" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
<species id="IFNb_env" name="IFNb_env" compartment="compartmentOne" initialConcentration="0" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
<species id="STATP2n" name="STATP2n" compartment="compartmentOne" initialConcentration="0" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
<species id="IRF7m" name="IRF7m" compartment="compartmentOne" initialConcentration="0" substanceUnits="substance" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
</listOfSpecies>
<listOfParameters>
<parameter id="KK3" name="KK3" value="0.0043" constant="true"/>
<parameter id="KK2" name="KK2" value="0.002" constant="true"/>
<parameter id="b4" name="b4" value="0.2" constant="true"/>
<parameter id="b1" name="b1" value="0.4" constant="true"/>
<parameter id="myf" name="myf" value="0" constant="false"/>
<parameter id="k11" name="k11" value="0.00036" constant="true"/>
<parameter id="vmax2" name="vmax2" value="72000" constant="true"/>
<parameter id="NA" name="NA" value="6.02e+23" constant="true"/>
<parameter id="ts" name="ts" value="0" constant="true"/>
<parameter id="k3" name="k3" value="1.23776282243" constant="true"/>
<parameter id="k5" name="k5" value="3600" constant="true"/>
<parameter id="k4" name="k4" value="0.69314718056" constant="true"/>
<parameter id="te" name="te" value="10" constant="true"/>
<parameter id="C" name="C" value="500000" constant="true"/>
<parameter id="myfs" name="myfs" value="0" constant="false"/>
<parameter id="r4" name="r4" value="0.00036" constant="true"/>
<parameter id="r0" name="r0" value="0.003" constant="true"/>
<parameter id="r1" name="r1" value="0.003" constant="true"/>
<parameter id="r2" name="r2" value="5.98006644518e-05" constant="true"/>
<parameter id="r3" name="r3" value="0.36" constant="true"/>
<parameter id="TJtot" name="TJtot" value="0.0001" constant="true"/>
<parameter id="tao6" name="tao6" value="1" constant="true"/>
<parameter id="tao3" name="tao3" value="0.56" constant="true"/>
<parameter id="tao1" name="tao1" value="2.5" constant="true"/>
<parameter id="k1" name="k1" value="0.277258872224" constant="true"/>
<parameter id="t" name="t" value="0" constant="false"/>
</listOfParameters>
<listOfRules>
<assignmentRule variable="myf">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<exp/>
<apply>
<times/>
<apply>
<minus/>
<ci> b1 </ci>
</apply>
<ci> t </ci>
</apply>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="myfs">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<exp/>
<apply>
<times/>
<apply>
<minus/>
<ci> b4 </ci>
</apply>
<ci> t </ci>
</apply>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="t">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol>
</math>
</assignmentRule>
</listOfRules>
<listOfReactions>
<reaction id="R_1" reversible="false" fast="false">
<listOfReactants>
<speciesReference species="STATP2n" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="IRF7m" stoichiometry="1" constant="true"/>
<speciesReference species="STATP2n" stoichiometry="1" constant="true"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> myfs </ci>
<ci> r4 </ci>
<ci> STATP2n </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R_2" reversible="false" fast="false">
<listOfReactants>
<speciesReference species="IRF7m" stoichiometry="1" constant="true"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k4 </ci>
<ci> IRF7m </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R_3" reversible="false" fast="false">
<listOfReactants>
<speciesReference species="IFNb_env" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="IFNb_env" stoichiometry="1" constant="true"/>
<speciesReference species="STATP2n" stoichiometry="1" constant="true"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> IFNb_env </ci>
<apply>
<divide/>
<ci> r3 </ci>
<apply>
<plus/>
<ci> KK3 </ci>
<ci> IFNb_env </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R_4" reversible="false" fast="false">
<listOfReactants>
<speciesReference species="STATP2n" stoichiometry="1" constant="true"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k3 </ci>
<ci> STATP2n </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R_5" reversible="false" fast="false">
<listOfReactants>
<speciesReference species="IFNb_mRNA" stoichiometry="1" constant="true"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="IFNb_env" stoichiometry="1" constant="true"/>
<speciesReference species="IFNb_mRNA" stoichiometry="1" constant="true"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> IFNb_mRNA </ci>
<apply>
<divide/>
<ci> r2 </ci>
<apply>
<plus/>
<ci> KK2 </ci>
<ci> IFNb_mRNA </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R_6" reversible="false" fast="false">
<listOfProducts>
<speciesReference species="IFNb_mRNA" stoichiometry="1" constant="true"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> myf </ci>
<ci> r1 </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R_7" reversible="false" fast="false">
<listOfReactants>
<speciesReference species="IFNb_mRNA" stoichiometry="1" constant="true"/>
</listOfReactants>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> k1 </ci>
<ci> IFNb_mRNA </ci>
</apply>
</math>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>