From 6595d882e8d51ae9ed2a46251046c546f5e60254 Mon Sep 17 00:00:00 2001 From: Adafede Date: Thu, 23 Dec 2021 16:03:28 +0100 Subject: [PATCH] updating make modes and targets for clarity --- ...nverifierLauncher_manual.sh => gnverifierLauncher_custom.sh} | 2 +- ...derLauncher_manual.sh => originalGnfinderLauncher_custom.sh} | 2 +- ...rLauncher_manual.sh => originalGnverifierLauncher_custom.sh} | 2 +- ...rLauncher_manual.sh => translatedGnfinderLauncher_custom.sh} | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) rename src/2_curating/2_editing/organism/shell/{gnverifierLauncher_manual.sh => gnverifierLauncher_custom.sh} (54%) rename src/2_curating/2_editing/organism/shell/{originalGnfinderLauncher_manual.sh => originalGnfinderLauncher_custom.sh} (53%) rename src/2_curating/2_editing/organism/shell/{originalGnverifierLauncher_manual.sh => originalGnverifierLauncher_custom.sh} (58%) rename src/2_curating/2_editing/organism/shell/{translatedGnfinderLauncher_manual.sh => translatedGnfinderLauncher_custom.sh} (52%) diff --git a/src/2_curating/2_editing/organism/shell/gnverifierLauncher_manual.sh b/src/2_curating/2_editing/organism/shell/gnverifierLauncher_custom.sh similarity index 54% rename from src/2_curating/2_editing/organism/shell/gnverifierLauncher_manual.sh rename to src/2_curating/2_editing/organism/shell/gnverifierLauncher_custom.sh index dbdbbda0..b361ce01 100644 --- a/src/2_curating/2_editing/organism/shell/gnverifierLauncher_manual.sh +++ b/src/2_curating/2_editing/organism/shell/gnverifierLauncher_custom.sh @@ -5,4 +5,4 @@ source 2_curating/2_editing/organism/shell/gnverifier.sh -gnverifier ../data/interim/tables_manual/2_processed/organism/verify.tsv.gz ../data/interim/tables_manual/2_processed/organism/verified.json +gnverifier ../data/interim/tables_custom/2_processed/organism/verify.tsv.gz ../data/interim/tables_custom/2_processed/organism/verified.json diff --git a/src/2_curating/2_editing/organism/shell/originalGnfinderLauncher_manual.sh b/src/2_curating/2_editing/organism/shell/originalGnfinderLauncher_custom.sh similarity index 53% rename from src/2_curating/2_editing/organism/shell/originalGnfinderLauncher_manual.sh rename to src/2_curating/2_editing/organism/shell/originalGnfinderLauncher_custom.sh index 335bcb67..853ab35c 100644 --- a/src/2_curating/2_editing/organism/shell/originalGnfinderLauncher_manual.sh +++ b/src/2_curating/2_editing/organism/shell/originalGnfinderLauncher_custom.sh @@ -5,4 +5,4 @@ source 2_curating/2_editing/organism/shell/gnfinder.sh -gnfinder ../data/interim/tables_manual/0_original/organism ../data/interim/tables_manual/2_processed/organism/original +gnfinder ../data/interim/tables_custom/0_original/organism ../data/interim/tables_custom/2_processed/organism/original diff --git a/src/2_curating/2_editing/organism/shell/originalGnverifierLauncher_manual.sh b/src/2_curating/2_editing/organism/shell/originalGnverifierLauncher_custom.sh similarity index 58% rename from src/2_curating/2_editing/organism/shell/originalGnverifierLauncher_manual.sh rename to src/2_curating/2_editing/organism/shell/originalGnverifierLauncher_custom.sh index b4e60bda..bdb37fb2 100644 --- a/src/2_curating/2_editing/organism/shell/originalGnverifierLauncher_manual.sh +++ b/src/2_curating/2_editing/organism/shell/originalGnverifierLauncher_custom.sh @@ -5,4 +5,4 @@ source 2_curating/2_editing/organism/shell/gnverifier_capital.sh -gnverifier_capital ../data/interim/tables_manual/0_original/organism/original.tsv.gz ../data/interim/tables_manual/2_processed/organism/original_verified.json +gnverifier_capital ../data/interim/tables_custom/0_original/organism/original.tsv.gz ../data/interim/tables_custom/2_processed/organism/original_verified.json diff --git a/src/2_curating/2_editing/organism/shell/translatedGnfinderLauncher_manual.sh b/src/2_curating/2_editing/organism/shell/translatedGnfinderLauncher_custom.sh similarity index 52% rename from src/2_curating/2_editing/organism/shell/translatedGnfinderLauncher_manual.sh rename to src/2_curating/2_editing/organism/shell/translatedGnfinderLauncher_custom.sh index 2303335f..11f3e752 100644 --- a/src/2_curating/2_editing/organism/shell/translatedGnfinderLauncher_manual.sh +++ b/src/2_curating/2_editing/organism/shell/translatedGnfinderLauncher_custom.sh @@ -5,4 +5,4 @@ source 2_curating/2_editing/organism/shell/gnfinder.sh -gnfinder ../data/interim/tables_manual/1_translated/organism ../data/interim/tables_manual/2_processed/organism/translated +gnfinder ../data/interim/tables_custom/1_translated/organism ../data/interim/tables_custom/2_processed/organism/translated