illumina-pipeline.yml

name: illumina-pipeline
channels:
  - biobuilds
  - http://conda.anaconda.org/gurobi
  - bioconda
  - r
  - conda-forge
  - defaults
dependencies:
  - _r-mutex=1.0.1=anacondar_1
  - bamstats=1.25=hdfc413a_1
  - bbmap=38.73=h01d97ff_0
  - blast=2.6.0=boost1.64_2
  - bowtie2=2.3.5=py37h5c9b4e4_0
  - bzip2=1.0.8=h0b31af3_2
  - ca-certificates=2019.11.28=hecc5488_0
  - certifi=2019.11.28=py37_0
  - curl=7.65.3=h22ea746_0
  - gsl=2.6=ha2d443c_0
  - htslib=1.9=h3a161e8_7
  - icu=64.2=h6de7cb9_1
  - jpeg=9c=h1de35cc_1001
  - krb5=1.16.4=h1752a42_0
  - libblas=3.8.0=14_openblas
  - libcblas=3.8.0=14_openblas
  - libcurl=7.65.3=h16faf7d_0
  - libcxx=9.0.1=1
  - libdeflate=1.0=h1de35cc_1
  - libedit=3.1.20170329=hcfe32e1_1001
  - libffi=3.2.1=1
  - libgcc=4.8.5=1
  - libgfortran=4.0.0=2
  - libiconv=1.15=h01d97ff_1005
  - libopenblas=0.3.7=h3d69b6c_6
  - libpng=1.6.37=h2573ce8_0
  - libssh2=1.8.2=hcdc9a53_2
  - libtiff=4.1.0=ha78913b_3
  - libxml2=2.9.10=h53d96d6_0
  - llvm-openmp=9.0.1=h40edb58_0
  - lz4-c=1.8.3=h6de7cb9_1001
  - ncurses=6.1=h0a44026_1002
  - openjdk=8.0.192=h1de35cc_1003
  - openssl=1.1.1d=h0b31af3_0
  - pcre=8.43=h4a8c4bd_0
  - perl=5.26.2=haec8ef5_1006
  - perl-threaded=5.26.0=0
  - picard=2.21.6=0
  - pip=19.3.1=py37_0
  - python=3.7.6=h5c2c468_1
  - r-base=3.3.1=0
  - readline=8.0=hcfe32e1_0
  - samtools=1.9=h8aa4d43_12
  - setuptools=44.0.0=py37_0
  - sqlite=3.30.1=h93121df_0
  - tbb=2019.9=ha1b3eb9_1
  - tk=8.6.10=hbbe82c9_0
  - trimmomatic=0.39=1
  - trinity=date.2011_11_26=3
  - varscan=2.4.4=0
  - wheel=0.33.6=py37_0
  - xz=5.2.4=h1de35cc_1001
  - zlib=1.2.11=h0b31af3_1006
  - zstd=1.4.4=he7fca8b_1
prefix: ~/anaconda3/envs/illumina-pipeline