You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I am currently running the Starsolo WDL protocol (https://github.com/lilab-bcb/cumulus/tree/2.6.3/workflows/starsolo/starsolo_workflow.wdl) as I have done previously, but I have encountered an error:
2024/10/02 09:58:49 Localizing input gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz -> /cromwell_root/fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz
Error attempting to localize file with command: 'mkdir -p '/cromwell_root/fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/' && rm -f /root/.config/gcloud/gce && gcloud storage cp 'gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz' '/cromwell_root/fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/''
Copying gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz to file:///cromwell_root/fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 0
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 2
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 7
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 6
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 4
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 5
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 3
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 1
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: Failed to download one or more component of sliced download.
..............................................................................................................................................................................................................................................................................................................................................................................
Average throughput: 141.8MiB/s
grep: /cromwell_root/stderr: No such file or directory
sh: write error: No space left on device
Could you please advise on the steps I should follow to troubleshoot and resolve this issue? I apologize for any inconvenience this may cause and appreciate your assistance.
Thank you in advance for your help.
Best regards,
Neu790
The text was updated successfully, but these errors were encountered:
Dear Cumulus Team,
I am currently running the Starsolo WDL protocol (https://github.com/lilab-bcb/cumulus/tree/2.6.3/workflows/starsolo/starsolo_workflow.wdl) as I have done previously, but I have encountered an error:
2024/10/02 09:58:49 Localizing input gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz -> /cromwell_root/fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz
Error attempting to localize file with command: 'mkdir -p '/cromwell_root/fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/' && rm -f /root/.config/gcloud/gce && gcloud storage cp 'gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz' '/cromwell_root/fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/''
Copying gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz to file:///cromwell_root/fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 0
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 2
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 7
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 6
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 4
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 5
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 3
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 1
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: Failed to download one or more component of sliced download.
..............................................................................................................................................................................................................................................................................................................................................................................
Average throughput: 141.8MiB/s
grep: /cromwell_root/stderr: No such file or directory
sh: write error: No space left on device
Could you please advise on the steps I should follow to troubleshoot and resolve this issue? I apologize for any inconvenience this may cause and appreciate your assistance.
Thank you in advance for your help.
Best regards,
Neu790
The text was updated successfully, but these errors were encountered: