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No space left on device #421

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Neu970 opened this issue Oct 8, 2024 · 0 comments
Open

No space left on device #421

Neu970 opened this issue Oct 8, 2024 · 0 comments

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@Neu970
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Neu970 commented Oct 8, 2024

Dear Cumulus Team,

I am currently running the Starsolo WDL protocol (https://github.com/lilab-bcb/cumulus/tree/2.6.3/workflows/starsolo/starsolo_workflow.wdl) as I have done previously, but I have encountered an error:
2024/10/02 09:58:49 Localizing input gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz -> /cromwell_root/fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz
Error attempting to localize file with command: 'mkdir -p '/cromwell_root/fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/' && rm -f /root/.config/gcloud/gce && gcloud storage cp 'gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz' '/cromwell_root/fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/''
Copying gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz to file:///cromwell_root/fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz

Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 0
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 2
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 7
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 6
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 4
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 5
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 3
Resuming download for gs://fc-a17dc2ff-9944-43db-a126-8b87eeb0b279/Reference_Mmu_UCSC_mm39_knownGene_Sep_2024.tar.gz component 1
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: [Errno 28] No space left on device
ERROR: Failed to download one or more component of sliced download.
..............................................................................................................................................................................................................................................................................................................................................................................

Average throughput: 141.8MiB/s
grep: /cromwell_root/stderr: No such file or directory
sh: write error: No space left on device

Could you please advise on the steps I should follow to troubleshoot and resolve this issue? I apologize for any inconvenience this may cause and appreciate your assistance.
Thank you in advance for your help.

Best regards,
Neu790

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