From 2544d4658ea5039392ddeb9e65857fda814a491e Mon Sep 17 00:00:00 2001 From: Yiming Yang Date: Tue, 30 May 2023 21:37:31 -0700 Subject: [PATCH] 2.4.1 release --- docs/release_notes/version_2_4.rst | 29 +++++++++++++++++++++++++++++ docs/starsolo.rst | 6 +++--- 2 files changed, 32 insertions(+), 3 deletions(-) diff --git a/docs/release_notes/version_2_4.rst b/docs/release_notes/version_2_4.rst index 934269c3..a68be0d0 100644 --- a/docs/release_notes/version_2_4.rst +++ b/docs/release_notes/version_2_4.rst @@ -1,3 +1,32 @@ +2.4.1 :small:`May 30, 2023` +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + +**Improve:** + +* In STARsolo workflow: + + * Add *limitBAMsortRAM* and *outBAMsortingBinsN* inputs to handle out-of-memory error in BAM sorting phase. + +* In GeoMx_fastq_to_dcc workflow: + + * Support multiple FASTQ folders as input. + +**Updates:** + +* In Demultiplexing workflow: + + * Upgrade *souporcell_version* to ``2022.12``, which is based on commit `9fb527 `_ on 2022/12/13. + +* In STARsolo workflow: + + * Upgrade *star_version* to ``2.7.10b``. + +**Bug Fixes:** + +* In Spaceranger workflow: + + * Fix the image localization issue for CytAssist samples. + 2.4.0 :small:`January 28, 2023` ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ diff --git a/docs/starsolo.rst b/docs/starsolo.rst index b6d33d47..778a6f1f 100644 --- a/docs/starsolo.rst +++ b/docs/starsolo.rst @@ -319,9 +319,9 @@ Below are inputs for *count* workflow. Notice that required inputs are in bold. - 50 - 50 * - star_version - - STAR version to use. Currently support: ``2.7.9a``, ``2.7.10a`` (`2.7.10a_alpha_220601 `_). - - "2.7.10a" - - "2.7.10a" + - STAR version to use. Currently support: ``2.7.9a``, ``2.7.10a`` (`2.7.10a_alpha_220818 `_), ``2.7.10b`` (`2.7.10b_alpha_230301 `_). + - "2.7.10b" + - "2.7.10b" * - docker_registry - Docker registry to use: