DESCRIPTION

Package: ELMER
Title:
	Inferring Regulatory Element Landscapes and Transcription Factor
	Networks Using Cancer Methylomes
Version: 1.2.1
Authors@R: c(person("Lijing", "Yao", role = c("cre", "aut"),
			email = "lijingya@usc.edu"),
		person("Ben", "Berman", role = "aut"),
		person("Peggy", "Farnham", role = "aut"),
		person("Hui", "Shen", role = "ctb"),
		person("Peter", "Laird", role = "ctb"),
		person("Simon","Coetzee", role = "ctb"))
Description:
	ELMER is designed to use DNA methylation and gene expression from a large number of samples to infere regulatory element landscape and transcription factor network in primary tissue.
Depends: R (>= 3.2.0), IlluminaHumanMethylation450kanno.ilmn12.hg19, Homo.sapiens, ELMER.data
License: GPL-3
LazyData: true
VignetteBuilder: knitr
Imports: GenomicRanges,ggplot2,reshape,grid,gridExtra,IRanges,GenomeInfoDb,S4Vectors,minfi,GenomicFeatures
Suggests: parallel, snow, BiocStyle, knitr
biocViews: DNAMethylation, GeneExpression, MotifAnnotation, Software, GeneRegulation