Dockerfile

# syntax=docker/dockerfile:1
# ........................................................
# Backend base image
# ........................................................
#FROM python:3.12.3-alpine3.20 as base
FROM python:3.12-slim-bookworm as base

LABEL maintainer="KU Biodiversity Institute <github.com/lifemapper/bison>"

RUN apt-get update
RUN apt-get install -y awscli
RUN apt-get install -y gcc
RUN apt-get install -y git
RUN apt-get install -y vim

RUN addgroup --gid 888 bison \
 && adduser --ingroup bison --uid 888 bison

RUN mkdir -p /home/bison \
 && chown bison.bison /home/bison

RUN mkdir -p /scratch-path/log \
 && mkdir -p /scratch-path/sessions \
 && chown -R bison.bison /scratch-path

# Run everything as the user 'bison'
WORKDIR /home/bison
USER bison

COPY --chown=bison:bison ./requirements.txt .

# Set up a virtual environment
RUN python3 -m venv venv \
 && venv/bin/pip install --upgrade pip \
 && venv/bin/pip install --no-cache-dir -r ./requirements.txt

# This assumes that the bison repository is present on the host machine and
# docker is run from the top of the repo directory (with bison subdir directly below).
COPY --chown=bison:bison ./bison ./bison
COPY --chown=bison:bison ./data ./data

# ........................................................
# Task image from base
# ........................................................
FROM base as task
# Install dev dependencies for debugging
RUN venv/bin/pip install debugpy

# Keeps Python from generating .pyc files in the container
ENV PYTHONDONTWRITEBYTECODE 1
# Turns off buffering for easier container logging
ENV PYTHONUNBUFFERED 1
COPY --chown=bison:bison ./config/aws.conf ./.aws/config

#CMD /bin/sh
#CMD tail -f /dev/null
CMD venv/bin/python -m ${TASK_APP}

# ........................................................
# Development flask image from base
# ........................................................
FROM base as dev-flask
# Install dev dependencies for debugging
RUN venv/bin/pip install debugpy

# Keeps Python from generating .pyc files in the container
ENV PYTHONDONTWRITEBYTECODE 1
# Turns off buffering for easier container logging
ENV PYTHONUNBUFFERED 1
ENV FLASK_DEBUG=True
# Logs in the window where the docker command is executed
CMD venv/bin/python -m debugpy --listen 0.0.0.0:${DEBUG_PORT} -m ${FLASK_MANAGE} run --host=0.0.0.0


# ........................................................
# Production flask image from base
# ........................................................
FROM base as flask

COPY --chown=bison:bison ./flask_app ./flask_app
#ENV FLASK_ENV=production
CMD venv/bin/python -m gunicorn -w 4 --bind 0.0.0.0:5000 ${FLASK_APP}

# ........................................................
# Frontend base image (for development)
# ........................................................
FROM node:16.10.0-buster as base-front-end

LABEL maintainer="Specify Collections Consortium <github.com/specify>"

USER node
WORKDIR /home/node

COPY --chown=node:node bison/frontend/js_src/package*.json ./
RUN npm install

RUN mkdir dist \
 && chown node:node dist

COPY --chown=node:node bison/frontend/js_src .


# ........................................................
# Frontend image (for production) from base-front-end
# ........................................................
FROM base-front-end as front-end

RUN npm run build