Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Data retrieval question #17

Open
bripaisley opened this issue May 30, 2024 · 0 comments
Open

Data retrieval question #17

bripaisley opened this issue May 30, 2024 · 0 comments

Comments

@bripaisley
Copy link

Hello,

I have been using this function for several years with great success, so thank you! I recently ran into an issue with certain gene IDs are not pulling back data. In the past I have used the following to get normal tissue expression data:
PNTE <- data.frame(getHpa(c("ENSG00000276155","ENSG00000277956","ENSG00000186868"), hpadata = "hpaNormalTissue"))
For this gene (MAPT), I am unable to retrieve any data this way even using the Ensembl IDs one at a time ("ENSG00000186868" is the one that should retrieve data). However, the data does exist when I use:
normtissue <- hpaNormalTissue()

Do I need to run hpaNormalTissue() each time before searching a single gene or should getHpa still work?

Using hpar 1.44.0

Thank you for any suggestions,
Brianna

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant