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When i run generateLabels.py file i got unable to open database file error #12
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Still working on a fix for this myself.. Please let me know if you figured it out |
In the directory That script should generate the required files for you to run the above commands. Edit: I'm sorry, I did not notice that the path I gave was incorrect ( |
The umls.sh just runs blank and does not download any of the files correctly. |
Did you find a fix to this issue? |
Please note that to execute the script, you will need to download the data from here as the instructions indicate when you run the file. Also, I have edited my previous comment with an updated path. Please try again. |
The umls files has been downloaded and step 2 generate labels was run, that's where the error comes. How did you address this? |
I think I am missing out on something, but here are the steps you need to follow:
The steps that I outline here are exactly what the |
I did these and these works seemingly fine, the error comes in step 11 . Are there any prerequisite for umls.sh & generate labels script ? mysql vs sqlite etc? |
Running generate labels script is generating labels with huge size. It is already 130GB and counting. My laptop space is already full. Can you please suggest if I am on the right path and how much total space it will take? Also if I am taking any wrong step and someone can correct me. |
When i run the python script i got the following error. How to fix this issue ? Please help me.
D:\OfficeWorks\Sytora\sytora>python generateLabels.py
Traceback (most recent call last):
File "generateLabels.py", line 35, in
conn = sqlite3.connect('./flaskapp/databases/umls.db')
sqlite3.OperationalError: unable to open database file
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