GAMCLDA

The implementation of “Inferring LncRNA-disease Associations Based On Graph Autoencoder Matrix Completion”, Ximin Wu, Wei Lan, Qingfeng Chen, Yi Dong, Jin Liu, Wei Peng. Computational biology and chemistry, 87:107282, 2020

Requirement

Python 3.6
Numpy
Sklearn
scipy
matplotlib
random
math
h5py
pickle
torch
argparse
itertools

Data

The diseases and lncRNAs association matrix: lncrna_disease_association.h5

The diseases features: disease_feature.h5

The lncRNAs features: lncRNA_feature.h5

Run

The 10-fold program entry: 10-fold.py

The denovo program entry: denovo.py