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rust-gadgets

Gadgets collection written in rust. Usually less than 200 lines.

List

  • week-of-year: Get the week number of this year.
  • table-filter: Regex-based tsv/csv file filter.
  • explain-flags: Explain sam flags according to picard
  • fastq-merge: Merge fastq pairs in a directory into one pair.
  • fastq-check: Fastq format check and quantity count.
  • splitted-dicordant-extract: Extract splitted and discordant reads from sam/bam according to lumpy.