From 70c57210d4fbdb530f606e853ffb2832422bbb18 Mon Sep 17 00:00:00 2001
From: Kartavya Vashishtha <sendtokartavya@gmail.com>
Date: Wed, 13 Dec 2023 11:05:25 -0500
Subject: [PATCH] change release to v1.2 test release binaries in
 build-release.sh overwrite existing example_inputs when extracting

---
 Dockerfile          |  2 +-
 build-dockerfile.sh |  2 +-
 build-release.sh    | 22 ++++++++++++++++++++--
 3 files changed, 22 insertions(+), 4 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 63aab1a..7c3de39 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -31,7 +31,7 @@ RUN apt-get update && \
 RUN Rscript -e 'install.packages(c("tidyverse", "umap", "ggrastr", "pins", "rmarkdown"))'
 
 WORKDIR /app
-COPY --from=build /app/librarian_v1.1 ./
+COPY --from=build /app/librarian_v1.2 ./
 RUN mkdir /app/out
 
 LABEL org.opencontainers.image.source https://github.com/DesmondWillowbrook/Librarian
diff --git a/build-dockerfile.sh b/build-dockerfile.sh
index 1fb58be..c7db807 100755
--- a/build-dockerfile.sh
+++ b/build-dockerfile.sh
@@ -5,7 +5,7 @@ sudo hwclock --hctosys # to sync time between host and WSL2
 podman build -t ghcr.io/desmondwillowbrook/librarian .
 
 cd frontend/example_inputs/
-unzip example_inputs.zip
+unzip -o example_inputs.zip
 cd -
 
 # try running the container
diff --git a/build-release.sh b/build-release.sh
index 9f7456c..7aa458a 100755
--- a/build-release.sh
+++ b/build-release.sh
@@ -14,5 +14,23 @@ mkdir -p $RELEASE_PATH
 # z tells it to use gzip
 # f tells it the archive to save to
 # -C changes directory, affects subsequent directory changes as well
-tar --transform 's,^,librarian_v1.1/,' -czf $RELEASE_PATH/librarian.tar.gz -C server scripts -C ../target/x86_64-unknown-linux-musl/release librarian 
-tar --transform 's,^,librarian_v1.1/,' -czf $RELEASE_PATH/server.tar.gz -C server scripts -C ../target/x86_64-unknown-linux-musl/release server
\ No newline at end of file
+tar --transform 's,^,librarian_v1.2/,' -czf $RELEASE_PATH/librarian.tar.gz -C server scripts -C ../target/x86_64-unknown-linux-musl/release librarian 
+tar --transform 's,^,librarian_v1.2/,' -czf $RELEASE_PATH/server.tar.gz -C server scripts -C ../target/x86_64-unknown-linux-musl/release server
+
+cd frontend/example_inputs/
+unzip -o example_inputs.zip
+cd -
+
+cd $RELEASE_PATH
+tar -xf librarian.tar 
+./librarian_v1.2/librarian ../frontend/example_inputs/example_inputs/ATAC.example.fastq --local --raw --output-dir=.
+
+# check whether the files are non-empty
+test -s librarian_heatmap.txt
+
+# check whether the files are recent
+test `find librarian_heatmap.txt -mmin -1`
+
+rm librarian_heatmap.txt
+
+cd -
\ No newline at end of file