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main.nf
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#!/usr/bin/env nextflow
/*
========================================================================================
nf-core/fetchngs
========================================================================================
Github : https://github.com/nf-core/fetchngs
Website: https://nf-co.re/fetchngs
Slack : https://nfcore.slack.com/channels/fetchngs
----------------------------------------------------------------------------------------
*/
nextflow.enable.dsl = 2
/*
========================================================================================
VALIDATE & PRINT PARAMETER SUMMARY
========================================================================================
*/
// WorkflowMain.initialise(workflow, params, log)
include { SRA } from './workflows/sra'
//
// WORKFLOW: Run main nf-core/fetchngs analysis pipeline depending on type of identifier provided
//
workflow NFCORE_FETCHNGS {
//
// WORKFLOW: Download FastQ files for SRA / ENA / DDBJ / GEO ids
//
SRA ( )
}
/*
========================================================================================
RUN ALL WORKFLOWS
========================================================================================
*/
//
// WORKFLOW: Execute a single named workflow for the pipeline
// See: https://github.com/nf-core/rnaseq/issues/619
//
workflow {
NFCORE_FETCHNGS ()
}
/*
========================================================================================
THE END
========================================================================================
*/