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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="PIrANHA | Scripts for file processing and analysis in phylogenetics and phylogeography">
<meta name="author" content="Justin Bagley">
<meta name="keywords" content="Justin Bagley,PIrANHA,scripts,shell scripts,R scripts,phylogenetics,phylogeography">
<title>PIrANHA</title>
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<link href="../vendor/bootstrap/css/bootstrap.min.css" rel="stylesheet">
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<link href="../css/1-col-portfolio.css" rel="stylesheet">
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<body>
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<nav class="navbar navbar-expand-lg navbar-dark bg-dark fixed-top">
<div class="container">
<a class="navbar-brand" href="../index.html">Justin C. Bagley - Ecological & Evolutionary Genetics</a>
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<p></p>
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<div class="span5 offset2">
<center>
<a href="http://github.com/justincbagley/PIrANHA"><img src="https://i.imgur.com/AQte6eh.png" title="source: Justin C. Bagley" width=50% height=50% align="center"></a>
</div>
<!-- <center><h1> PIrANHA </h1> -->
<!-- <center><p> Scripts for file processing and analysis in phylogenomics and phylogeography</p> -->
</div>
<p></p>
<!-- <hr> -->
</div>
<!-- /.container -->
<!-- PIrANHA Content -->
<div class="container-narrow">
<!-- Page Heading -->
<!-- <h1 class="my-4">Recent Projects -->
<!-- OPTION BELOW: small text next to h1 heading, e.g. subheading) -->
<!-- <small>(on-going and published)</small> -->
<!-- <h1 class="my-4">PIrANHA
</h1> -->
<!-- <p><a href="http://imgur.com/qLNrh5B"><img src="http://i.imgur.com/qLNrh5B.png" title="source: Justin C. Bagley" width=60% height=60% align="center"></a></p> -->
<p><a href="https://www.codacy.com/app/justincbagley/PIrANHA?utm_source=github.com&utm_medium=referral&utm_content=justincbagley/PIrANHA&utm_campaign=Badge_Grade"><img src="https://api.codacy.com/project/badge/Grade/6ebf8b42a35f4b74a6a733312ac1d632" alt="Codacy Badge" /></a> <a href="LICENSE"><img src="http://img.shields.io/badge/license-GPL%20%28%3E=%202%29-green.svg?style=flat" alt="License" /></a></p>
<p>Scripts for file processing and analysis in phylogenomics & phylogeography</p>
<h2 id="license">LICENSE</h2>
<p>All code within the <code class="highlighter-rouge">PIrANHA</code> v0.4a4 repository is available “AS IS” under a 3-Clause BSD license. See the <a href="/PIrANHA/LICENSE">LICENSE</a> file for more information.</p>
<h2 id="citation">CITATION</h2>
<p>If you use scripts from this repository as part of your published research, I require that you cite the repository as follows (also see DOI information below):</p>
<ul>
<li>Bagley, J.C. 2020. PIrANHA v0.4a4. GitHub repository, Available at: <a href="https://github.com/justincbagley/piranha">http://github.com/justincbagley/PIrANHA</a>.</li>
</ul>
<p>Alternatively, please provide the following link to this software repository in your manuscript:</p>
<ul>
<li><a href="https://github.com/justincbagley/piranha">https://github.com/justincbagley/PIrANHA</a></li>
</ul>
<h2 id="doi">DOI</h2>
<p>The DOI for <code class="highlighter-rouge">PIrANHA</code>, via <a href="https://zenodo.org">Zenodo</a>, is as follows: <a href="https://doi.org/10.5281/zenodo.596766"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.596766.svg" alt="DOI" /></a>. Here are some examples of citing PIrANHA using the DOI:</p>
<p>Bagley, J.C. 2020. PIrANHA v0.4a4. GitHub package, Available at: <a href="http://doi.org/10.5281/zenodo.596766">http://doi.org/10.5281/zenodo.596766</a>.</p>
<p>Bagley, J.C. 2020. PIrANHA. Zenodo, Available at: <a href="http://doi.org/10.5281/zenodo.596766">http://doi.org/10.5281/zenodo.596766</a>.</p>
<h2 id="documentation">DOCUMENTATION</h2>
<p>For additional information on this distribution, including pipelines, installation, capabilities, etc., please see the documentation given in the <a href="https://github.com/justincbagley/piranha/wiki">PIrANHA wiki!!!</a></p>
<hr>
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<p class="m-0 text-center text-white">Copyright © 2018 Justin C. Bagley</p>
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<p class="m-0 text-left text-white"><font size="-2">This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">Creative Commons Attribution-ShareAlike 4.0 International License</a>.</font></p>
<p class="m-0 text-left text-white"><font size="-2">See <a rel="policies" href="https://justinbagley.org/policies.html">policies</a> for terms and conditions.</font></p>
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